Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1327 ATGGAGAGGGACTTCTTGGGTCTAAGGTCAAAAGAACCATTACCTATGGTGAAGGAGGAGATTAACAATGATGGATGCAAATATTCAGGCTTCACTAGGGGTTCAGTTGTACAATGGCCCTTCTCGAACAAAGTATCTGCTCTCCCACATTTGATGTCTTTTAAGGTTTCTCAAGATGACAAGACCAGGAAGATGGGGTCTGATACCCTCATATCTGCTGCTGAAATCCAGAAACCTTTCAATCACGATGTGCAAAGTGGTTTTCATTTTTCCCTGACTCCGTATCCTGTACCAAATGATGTGAATTCGCTGGATCGTCCTCAAGATGTGAAGATGTTTTCAGCTCCCAATCAAGCAATTCCTATTTCCATGGGACACCCTTTCTTGAAGAACCATTTCACCACTATGGCTGGCAATAATGTGAAGCAACAGCTGCTTGGGGGTATACCTGTTAATTTGCCTCATTTAGTACCCATCACCATCGGTTCTGTTGCCGCAATGACTGAATCATGTCTGAAGCCACCTGCACCTCCCAGTCAACTCACCATTTTCTATGCTGGTGCTGTGAATGTTTTTGAGGATATCTCTCCTGAGAAGGCACAAGCTATCATGCTGTTGGCTGCAAATGGGTTACCTTTGACTTCTAACAAGGCACAGCCGAACATTCAGGCACCAAACTCAAAGTTGACTTCAGGTGAAGGTGTCCCTGTGAGTCAACCCATAAGTACAACGCCTTGTGCTGGTCTTTCCAGTCCTCTATCTGTGTCTTCGCATATGGGTGCACAGTCAAGGAGTGGCTCAACTAGCACTGGTGAGCTTCTGGCAGCTAAAACAACTGGAGTTTCCACCACTCCTGTTAGCAAAGTGGAGCCTCCAAAAGTAGTCAATGCAACTGCTATGTTGCCTTCTGCTGTGCCACAGGCTCGCAAAGCATCATTGGCACGATTTTTGGAGAAGCGCAAAGAAAGGGTGATGAGTGCCGCAGCACCATACAACCTAAGCAAGAAATCCGAGGATGTTGCTATTTTCTCTGCAACTACTTCGGCTGGTTCTAGTATCCTATCAGCAAAGCAAGCATAG 1080 0.4593 MERDFLGLRSKEPLPMVKEEINNDGCKYSGFTRGSVVQWPFSNKVSALPHLMSFKVSQDDKTRKMGSDTLISAAEIQKPFNHDVQSGFHFSLTPYPVPNDVNSLDRPQDVKMFSAPNQAIPISMGHPFLKNHFTTMAGNNVKQQLLGGIPVNLPHLVPITIGSVAAMTESCLKPPAPPSQLTIFYAGAVNVFEDISPEKAQAIMLLAANGLPLTSNKAQPNIQAPNSKLTSGEGVPVSQPISTTPCAGLSSPLSVSSHMGAQSRSGSTSTGELLAAKTTGVSTTPVSKVEPPKVVNATAMLPSAVPQARKASLARFLEKRKERVMSAAAPYNLSKKSEDVAIFSATTSAGSSILSAKQA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1327 359 Pfam Jas motif 306 331 IPR018467 -
Lele53g1327 359 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 116 336 IPR040390 -
Lele53g1327 359 ProSiteProfiles Tify domain profile. 174 209 IPR010399 -
Lele53g1327 359 SMART tify_2 174 209 IPR010399 -
Lele53g1327 359 Pfam tify domain 176 208 IPR010399 -
Lele53g1327 359 MobiDBLite consensus disorder prediction 218 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1327 Lele-ChrLele53 21574314 21577034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1327 37 337 Tify Gene Family AT3G17860 37.188 4.84e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele53g1327 tify 5.4e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1327 53 21574314 21577034 Lele55g0150 55 959501 962201 hybridization
Lele53g1327 53 21574314 21577034 Lele56g0148 56 1368371 1371055 hybridization