Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1316 ATGAACAAGCTTGTCTTCAACTGTTCCATCGCTTCCATGTTTCTTATCATTTACTCTTTCATTGTTTTGGATGGTACTCAAGCTTCGTCCTTATCTTGCCTCCATACTCCATACCCTCATGTCTGCAATCACTACATGACGACCAATACACTTTCAACTTCTTCTTCCTCCAGCTTCCATGATATGGCTCTTAGGGTCACTTTGGACCAAGCCATTGAAGCCCACCAGCTTGTTTCTACCATGAAACTTGACAATCACTTCACTGACAAGCGAGCCAAGTTGGCCTGGACCGATTGCTCAGAGCTCTATGAAGACACCGTTCACCATCTTAACCGCTCTGTTATGAGCTCTACAAACCTAAACGATAGGCTCACCTGGTTAAGTGCCTCCATTGCCAACCACCAAACTTGCCAAAATGGCTTCCTTGACTTCAACCTTCATGCACACCTCAGCTTCTTCCCAGACATGCTCACTAACTTCTCCAAATTGATCAGCAATTCCTTAGCCATTACCAGTGCCATGTCGACGTCCTCGTCGTCATCATTAGGACAAATTGATAATAATAATAATAATAATAATAATGGTGGGAGGAAGTTGCTGTTTGAAGGATTTCCCGACTGGGTTTCCAGCTCGGATAGGAGGCTTCTTGCGGCGGGGTCAGTGGGGGCTGATGTGGTGGTCGCGAAAGATGGGAGTGGGCACTATATGACGATAACGGAGGGGGTGGAGGCGGCGAGTAAGTTGAGTGGCGGCGGAGGGAGGAGGGTAGTGGTACACGTAAAAGGGGGTGTGTATAAAGAGAACGTAGTGATTAAGAGGACAATGAAGAACCTGATGATCGTCGGAGATGGGATTGGTGTTACCGTTGTTTCGGGTAGCAACGATGGTCAAGAAACCACCACTTTTCGTTCTGCTACTTTTGGTGTTTCTGGGGACAACTTCATGGCCCGAGATATGACCTTCGAGAACACCGCCGGGCCTGGGAGTCACCAGGCGGTGGCTTTTCGCTCTGGCGCCGACCACTCTGTGTTCTACCGGTGCAGCTTCAAGGGCTACCAAGATACTTTGTACGTCTACTCACAGCGCCAATTCTACCGTGACTGCGATGTCTACGGCACCGTGGACTTCATCTTCGGCGACGCCGTCGCTATCCTCCAGAACTGCAACATCTACGTGAGAAGGCCGATGAGCAACCAGCAGAACACGGTGACGGCGCAGGGGAGATCCGACCCAAACGAGAACACAGGCATTATCCTCCACGGCTGCCGTGTGACTGCATCGTCAGACATGAGGCCGGTGCAGGGCTCGTTCAATACCTTTCTGGGCCGGCCGTGGAAGGAGTACTCGAGGACGGTGGTGATGAAGAGCAACCTCGACGGGCTGATCCACCCGGCGGGTTGGATGCCGTGGAGTGGTAACTTCGCTCTGAAGACTCTATATTACGGCGAATATATGAACACAGGAAGTGGAGCCGCCACTGGTGGAAGAGTGAAATGGCCAGGGTTTCATGTGATCACGAGTCCGCTGGAGGCCGGGAAATTCACAGTTGGGAATTTTCTGGCCGGGCAGTCGTGGATTGCCGGCACCGGCGTACCGTTCGACGCAGGGTTGTGA 1614 0.5161 MNKLVFNCSIASMFLIIYSFIVLDGTQASSLSCLHTPYPHVCNHYMTTNTLSTSSSSSFHDMALRVTLDQAIEAHQLVSTMKLDNHFTDKRAKLAWTDCSELYEDTVHHLNRSVMSSTNLNDRLTWLSASIANHQTCQNGFLDFNLHAHLSFFPDMLTNFSKLISNSLAITSAMSTSSSSSLGQIDNNNNNNNNGGRKLLFEGFPDWVSSSDRRLLAAGSVGADVVVAKDGSGHYMTITEGVEAASKLSGGGGRRVVVHVKGGVYKENVVIKRTMKNLMIVGDGIGVTVVSGSNDGQETTTFRSATFGVSGDNFMARDMTFENTAGPGSHQAVAFRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDVYGTVDFIFGDAVAILQNCNIYVRRPMSNQQNTVTAQGRSDPNENTGIILHGCRVTASSDMRPVQGSFNTFLGRPWKEYSRTVVMKSNLDGLIHPAGWMPWSGNFALKTLYYGEYMNTGSGAATGGRVKWPGFHVITSPLEAGKFTVGNFLAGQSWIAGTGVPFDAGL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1316 537 Gene3D - 218 537 IPR012334 -
Lele53g1316 537 SMART PMEI_2 24 170 IPR006501 GO:0004857
Lele53g1316 537 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Lele53g1316 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 172 IPR006501 GO:0004857
Lele53g1316 537 FunFam Pectinesterase 218 537 - -
Lele53g1316 537 Pfam Plant invertase/pectin methylesterase inhibitor 32 170 IPR006501 GO:0004857
Lele53g1316 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 175 IPR035513 -
Lele53g1316 537 ProSitePatterns Pectinesterase signature 1. 252 271 IPR018040 -
Lele53g1316 537 SUPERFAMILY Pectin lyase-like 221 536 IPR011050 -
Lele53g1316 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 174 IPR035513 -
Lele53g1316 537 CDD PMEI-like_3 31 170 - -
Lele53g1316 537 PANTHER PECTINESTERASE 18 527 - -
Lele53g1316 537 Pfam Pectinesterase 224 522 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1316 Lele-ChrLele53 21518410 21520821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1316 32 537 Carbohydrate Esterase AT1G23200 53.497 0.0 537