Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1297 ATGACAGCTCTAGTCCCTGCAGAAGAGACCCGTGTTTCTATTTCTTTGAAAGCTGTCATTTTATTGCTCAGTCCTGTGGGTACTCAAAAGAGAGAACTTGGCCAACGCCATATTACCATGCTTATACTTTCAAAATTAATTCCCACCAATTTTTTCTTCAACCTCCACCTTGCTCCATTCCTTACGACCCTCAATTTCTCTTCGCGCGCCCTTACAAATAAACAAAAGTTTCTGACCATAGAAGCATTTACCACCCTGTTGCGATCATGTTCCTCGAATCCATATCAGCTGAAACAAATCCATGCCCTCCTCCTCACATCAGGCCTCTCCATCAAGAACAGGCTTCTGACGCGTCTTCTCACCAGATACATCGCATTGGGCGATATGCTGTATGCCCGTCAACTGTTCGATGAAATGCATAAGCCACGGACTTTCTTGTGGAACACCCTGATCATAGGTCACATGCAAAATGGCCAACCCAATGAAGCTGCCTCCATTTATAAGCGAATGCATCTCCTCGGTGTACGTCCTGATTCGTTCACATTTCCATTCGTCATCAAGGCTTGTGCTGAGCTGCCTGAATTCCAGGCTGCGGGTCCCACTGCACATGCCCAGGTGGTGAAATATGGGGTCGAGTTTGTTGCAGTGATAAGGACTGAATTGATGATAATGTATGTCAAACTTGGAGAGCTGGGTTTAGCTGGCTTTTTGTTTACGACCATGGTGGAAAGAGATTTAGTGGCATGGAATGCTTTCATTGCGGCGTGTGCCCAAAATGGACATGGTGTTTTGGCTCTTGCTTTGTTTCGTGAAATGGGTTCAACTGGAACTCGGCCAGATGCTGTGACTTTGGTGAGTGCTCTTTCAGTTTGTGGCCAATTAGGGTGCTCGGATACTGGGGAGGAAATTTATCGTGTTGCAAGAGGAGAGATCGATTGCAACATAATTGTTGAAAATGCACGGCTAGACATGCATCTGAAGTGTGGTAATATCGACTTTGCGGTTGAATTGTTTGAGAAAATTCCTCGCAGGAATGTAATTTCATGGAGTACGATGATTTTAGGATATGCTATTAATGGGGAAAGTGGAAAGGCATTATCCTTGTTTTCTAGGATGCAGAGAGAGGGATTGCGACCAAATTATGTTACGTATCTAGGGGTTTTGTCAGCTTGTAGCCATGCTGGACTAGTGAGTCAAGGCTGGAGATATTTTAATCGGATGTCTCGATCAGATGATGAAAGCATTAAACCCAGGAAAGAACATCATGCGTGCATGGTTGATCTTCTTGGCCGGTCAGGACGTCTTGAAGAAGCGTATAACTTCATCAGAAGCATGCCTATTCAGGCAGACTCGGGAGTATGGGGGGCTCTATTGAGCGCCTGTGTTACACACCAAAACCTGGAATTGGGCCAATATGCCGCAGGTCGTCTTTATGAACTAGCTCCTGATGTTGCTTCATACCAGGTTCTAATGTCAAATATGTATGCATCTGCTGGGAGGTGGGATTTTGTTAAAATGGTGAGGCAGAGGATGAGGAAGAAGGGTGTTAGAAAAATAGCTGCTTATAGCTCAGTCGAGTTTAACGGTGAGCTACATGTTTTCTATGGGGGAGATAGGTCACATCCACAGTCAGAGATTATATATGCAAAGTTGGATTGTTTGATTAAACAAATGAAGAGTATGGGTTACATTTCAAAGACCAATTCTGTGTTCCATGATGTGGAATTGGAAGAGAAGGAATCAATTATCAGCACTCACAGTGAAAAGCTCGCCATCGCATTTGTTTTAAGTAATGTAGGGCCTGAACGCCCCGTCAGAGTGATCAAGAATTTGAGAATATGTGATGACTGCCATACTTTCTCTAAATTTGTCTCCCAAATTTCATCAAGAGAGATAATTATGAGAGATAAAATTCGTTTTCATCATTTCAGGAATGGAGTTTGTTCATGTAAGGATTTCTGCAAGCAAAACCCTGGAGTTGGACAGTGCCAAAAATCTGTTATTTTAATAAATTTCGGGGCTGCATTCTGGACTTGGATTTTCATGAATGATCGATTAACATTGAAGAAGTCAGCAGTATGTATCCTCTATGTCTCAGACACTGATCAGAACTCAGAATTTTCTGCAATTTCTATTAATCGCATTATATTACTTCTGGATATGAAATGCCTTCAGAAATGGGAATCCCAAGCAGTTCATCCATTGATTGTATGGGTGGTTCACCCCGGCCAGGATGGATTTGCTCCCGACAAGATGATATCAGCTATGCTTCCAGATCAACACTTTATGGTTAGACACTTAAAAGCTGAGGAAGTTGAACCTGAAAGGGTTCAACTTGTAGTACCTACGGCACTTGTATGTAGAACGTTCAGAGAATGCGTGTGGAAATATGGGGGAAAAAATGGAAACACACTTGCCTTCAAGCTTCACTCTCTCAGTACTCCAAATTCCACCCTTAATTCTGCTGCACCTCCCAAAATCATACCTTTCTGTATTTGCACTCACTGCGCCAATCTCATCCCTTTGAATCATCCTCTGGGAGATGAAGGAGCAAGGACAACAAGCAGGGGGTTGCATGGGCAATCTCAGCAAAGCTCGAGGTGGAGTCCAACGCCAGCACAGTTACTGATGCTTGAAGAACTGTACAGACAAGGGACGAAGACGCCGACGGCCGAACAAATACAGCAAATAGCTTCACAGCTACGTCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAAGCAAGAGAGCGCCAGAAACGACGTCGCCGGGATATGGAGGAAGCAGCTTCTGATTCCGCTGAAGACAAACAACTGTACGTTGTTAATATGAGAAGCTCAGAAGAAAAGCAAGACCCTGCAGGGTTGAGAGGGACAGGCTATAAAGTTAAAGAGACAAAGAAGTGGGCATCTTCTCCAAACCGTAGTGCCCTTCCACAGGAACTAGCAGAGAAAAGAACACAAGTTTTGAAACCAGAGCAAACAACACCTCTCTCACAAAAGTTTACCTATCAAAATCATAATTTACCATTTATACTCAACAGAGAAAATTGCACCTACTGTGATGAAGAAGAATATTCAAACATCAGAACCCTTGAGCTTTTTCCTCTTAAGAGGGGAGACCAACACGGCATGTCTCTCAATGACAGCAAATCTAGGCTTTGTGCATCAACTTCTCTGGGCACTGAAATTGCCACCTCATGCCATTTTTTTGAGTTCCTTCCTCTGAAAGACTGA 3255 0.4363 MTALVPAEETRVSISLKAVILLLSPVGTQKRELGQRHITMLILSKLIPTNFFFNLHLAPFLTTLNFSSRALTNKQKFLTIEAFTTLLRSCSSNPYQLKQIHALLLTSGLSIKNRLLTRLLTRYIALGDMLYARQLFDEMHKPRTFLWNTLIIGHMQNGQPNEAASIYKRMHLLGVRPDSFTFPFVIKACAELPEFQAAGPTAHAQVVKYGVEFVAVIRTELMIMYVKLGELGLAGFLFTTMVERDLVAWNAFIAACAQNGHGVLALALFREMGSTGTRPDAVTLVSALSVCGQLGCSDTGEEIYRVARGEIDCNIIVENARLDMHLKCGNIDFAVELFEKIPRRNVISWSTMILGYAINGESGKALSLFSRMQREGLRPNYVTYLGVLSACSHAGLVSQGWRYFNRMSRSDDESIKPRKEHHACMVDLLGRSGRLEEAYNFIRSMPIQADSGVWGALLSACVTHQNLELGQYAAGRLYELAPDVASYQVLMSNMYASAGRWDFVKMVRQRMRKKGVRKIAAYSSVEFNGELHVFYGGDRSHPQSEIIYAKLDCLIKQMKSMGYISKTNSVFHDVELEEKESIISTHSEKLAIAFVLSNVGPERPVRVIKNLRICDDCHTFSKFVSQISSREIIMRDKIRFHHFRNGVCSCKDFCKQNPGVGQCQKSVILINFGAAFWTWIFMNDRLTLKKSAVCILYVSDTDQNSEFSAISINRIILLLDMKCLQKWESQAVHPLIVWVVHPGQDGFAPDKMISAMLPDQHFMVRHLKAEEVEPERVQLVVPTALVCRTFRECVWKYGGKNGNTLAFKLHSLSTPNSTLNSAAPPKIIPFCICTHCANLIPLNHPLGDEGARTTSRGLHGQSQQSSRWSPTPAQLLMLEELYRQGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRRDMEEAASDSAEDKQLYVVNMRSSEEKQDPAGLRGTGYKVKETKKWASSPNRSALPQELAEKRTQVLKPEQTTPLSQKFTYQNHNLPFILNRENCTYCDEEEYSNIRTLELFPLKRGDQHGMSLNDSKSRLCASTSLGTEIATSCHFFEFLPLKD 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1297 1084 MobiDBLite consensus disorder prediction 923 943 - -
Lele53g1297 1084 FunFam Pentatricopeptide (PPR) repeat-containing protein 410 573 - -
Lele53g1297 1084 Gene3D Tetratricopeptide repeat domain 200 313 IPR011990 GO:0005515
Lele53g1297 1084 MobiDBLite consensus disorder prediction 855 870 - -
Lele53g1297 1084 FunFam Pentatricopeptide repeat-containing protein 161 300 - -
Lele53g1297 1084 FunFam Pentatricopeptide repeat-containing protein mitochondrial 304 408 - -
Lele53g1297 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Lele53g1297 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lele53g1297 1084 SMART HOX_1 863 930 IPR001356 GO:0003677
Lele53g1297 1084 MobiDBLite consensus disorder prediction 851 870 - -
Lele53g1297 1084 Pfam E motif 464 526 IPR046848 -
Lele53g1297 1084 TIGRFAM PPR: pentatricopeptide repeat domain 146 179 IPR002885 -
Lele53g1297 1084 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Lele53g1297 1084 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Lele53g1297 1084 ProSiteProfiles 'Homeobox' domain profile. 861 926 IPR001356 GO:0003677
Lele53g1297 1084 Gene3D - 858 925 - -
Lele53g1297 1084 CDD homeodomain 867 921 IPR001356 GO:0003677
Lele53g1297 1084 Pfam PPR repeat family 344 392 IPR002885 -
Lele53g1297 1084 Pfam PPR repeat family 142 190 IPR002885 -
Lele53g1297 1084 Pfam DYW family of nucleic acid deaminases 562 653 IPR032867 GO:0008270
Lele53g1297 1084 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 591 - -
Lele53g1297 1084 Pfam PPR repeat 247 273 IPR002885 -
Lele53g1297 1084 SUPERFAMILY Homeodomain-like 860 928 IPR009057 -
Lele53g1297 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Lele53g1297 1084 Pfam Homeodomain 865 925 IPR001356 GO:0003677
Lele53g1297 1084 Gene3D Tetratricopeptide repeat domain 316 527 IPR011990 GO:0005515
Lele53g1297 1084 Gene3D Tetratricopeptide repeat domain 69 199 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1297 Lele-ChrLele53 21392236 21403067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1297 98 653 Glycoside Hydrolase AT3G49170 39.362 6.43e-126 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele53g1297 DYW_deaminase 7.6e-35 CL0109