Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1285 ATGGATTTTCTGGCAAATCCATGCCCTTTGCCTCTCTCTCTGCTGTTTTCGTTCCGGAATTTCGTTGAACGGGCGAAACAGATTAGCAGTCTCGCGATTTCTGCAATCGTGGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCCTTAGTGGGAACGTTGTTGGGAGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTAGGAGCCATATCAGGAGCTGTGTTTTCCCTTGAAGTGTTTGAATCTTCCCTTATTCTTTGGCAAACCGACGAATCTGGGATTCGGTGTCTCTTATACTTGATTGACGTTATTACTAGCCTACTGAGTGGGAGGCTTGTCCGTGAGAGGATTGGTCCGGCCATGCTAAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAGCAAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAGGTGCCAAAGGTTTATCAGGAGATTTAGTTGAAAAAATTCCAATAATAACAATCACAGGTGACGACAATATTGATGCCTGTGGTGAAAGAGTTTCCTGTTCGGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAAATTGCCCCATTGTCATCACATGTTTCACCTACCTTGTATAGATAAGTGGCTCTTCGGGCACGGTTCTTGCCCATTATGCAGAAGAGATCTGTAA 708 0.4605 MDFLANPCPLPLSLLFSFRNFVERAKQISSLAISAIVGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSLEVFESSLILWQTDESGIRCLLYLIDVITSLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEIQNLFDTGGAKGLSGDLVEKIPIITITGDDNIDACGERVSCSVCLQDFQLGETVRKLPHCHHMFHLPCIDKWLFGHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1285 235 CDD RING-H2_PA-TM-RING 190 232 - -
Lele53g1285 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Lele53g1285 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Lele53g1285 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 234 IPR044523 -
Lele53g1285 235 SUPERFAMILY RING/U-box 189 235 - -
Lele53g1285 235 Pfam Ring finger domain 189 232 IPR001841 -
Lele53g1285 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lele53g1285 235 SMART ring_2 190 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1285 Lele-ChrLele53 21326173 21328646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1285 20 235 C3H Transcription Factor Family AT5G66070 73.148 2.98e-111 317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0055 52 356008 363558 Lele53g1285 53 21326173 21328646 CCT
Lele49g0049 49 319049 325208 Lele53g1285 53 21326173 21328646 CCT
Lele50g0057 50 389962 396192 Lele53g1285 53 21326173 21328646 CCT
Lele51g0055 51 324178 330356 Lele53g1285 53 21326173 21328646 CCT