Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1281 ATGGAGGCTGATATTGATACAGTAAGTTCCTCATCATCATCATCTTACTACAGCATTCTCGGTGTCGATTCGGATTCTTCTCTTGAAGAAATAAGGCGCGCTTATCGCAAGCTTGCCATGCAATGGCATCCGGATAGGTGGACAAGAACACCTTCTCTACTGGGTGAAGCAAAACGAAAGTTCCAGCAAATTCAGGAAGCCTATTCAGTATTATCGGACGAAAGCAAAAGAACGATGTACGATGCAGGCTTGTACGATCCCCAAGAAGAAGAGGATGAAGGGTTTTATGACTTTGTGCAAGAGCTGAAGACGCAAGTGAGCAGAGAGGAGAAGGAATATAGTATAGAGGAGTTGCAGAGCATGCTAATGGAAATGGTGCAAGAATTCGAGAATCCTTCGTGGCAATTGGGAGGCTCAGCAGTGGATGAGGAAAGCCAGTGCTCAAAGAGGGCTCGTCTGGACTCAAAGATGAATTTGCGGTCACCTTTTCACGAGCCGGGGCTTCATTTGTATGAAACGAGGGGTTACTGTAGTTAG 537 0.46 MEADIDTVSSSSSSSYYSILGVDSDSSLEEIRRAYRKLAMQWHPDRWTRTPSLLGEAKRKFQQIQEAYSVLSDESKRTMYDAGLYDPQEEEDEGFYDFVQELKTQVSREEKEYSIEELQSMLMEMVQEFENPSWQLGGSAVDEESQCSKRARLDSKMNLRSPFHEPGLHLYETRGYCS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1281 178 Coils Coil 99 128 - -
Lele53g1281 178 Gene3D DnaJ domain 3 113 IPR036869 -
Lele53g1281 178 Pfam DnaJ domain 16 81 IPR001623 -
Lele53g1281 178 PRINTS DnaJ domain signature 17 35 IPR001623 -
Lele53g1281 178 PRINTS DnaJ domain signature 56 76 IPR001623 -
Lele53g1281 178 PRINTS DnaJ domain signature 35 50 IPR001623 -
Lele53g1281 178 Coils Coil 54 74 - -
Lele53g1281 178 ProSiteProfiles dnaJ domain profile. 15 84 IPR001623 -
Lele53g1281 178 SUPERFAMILY Chaperone J-domain 11 87 IPR036869 -
Lele53g1281 178 SMART dnaj_3 14 76 IPR001623 -
Lele53g1281 178 PANTHER PUTATIVE, EXPRESSED-RELATED 11 142 - -
Lele53g1281 178 CDD DnaJ 19 73 IPR001623 -
Lele53g1281 178 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1281 Lele-ChrLele53 21306876 21308121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1281 9 82 C2H2 Transcription Factor Family AT1G74250 42.667 9.99e-13 63.5