Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1277 ATGGCGGTTTCACCTAGCAGCACTTCCAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTCCTCCTCCTCTTCCTTCATCTGCAGTGAGAGAGTTAGACATAAACCGAGTACCGTCATCAGAAGAGGAATGGATAACAATGGAAGAAGAAGAAGAGAGCAGTAATGGAGGAGGATGTCCTCCTCGTAAGAAACTCCGTCTTACCAAGGAACAGTCCCGTCTCCTCGAGGACAGCTTCAGACAAAACCACACTCTCAACCCTAAGCAGAAGGAATCATTGGCAAAGCAGCTGAATCTGCGAGAGAGGCAAGTGGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGACTACCTCAAGAGATGGTTTGGATCGCTGACAGAGCAGAACAGAAAGCTGCATAAGGAAGTGGAAGAGCTTAGGGCCATGAAGGTGGGTCCCCCCACTGTGATATCGCCCCACAGTGGCCACCCACTTCCGGCGTCAACCCTAATAATGTGTCCTCGCTGCGAGAAGGTCACGACCGCCGCCGCCGCCCGACATTCTCATTCGCCTCCCGCCCCTTCTTCTTCCCTTCTATAA 612 0.5261 MAVSPSSTSSLELTISVPGFASPPPLPSSAVRELDINRVPSSEEEWITMEEEEESSNGGGCPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKQLNLRERQVEVWFQNRRARSKLKQTEMECDYLKRWFGSLTEQNRKLHKEVEELRAMKVGPPTVISPHSGHPLPASTLIMCPRCEKVTTAAAARHSHSPPAPSSSLL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1277 203 CDD homeodomain 63 121 IPR001356 GO:0003677
Lele53g1277 203 MobiDBLite consensus disorder prediction 1 28 - -
Lele53g1277 203 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Lele53g1277 203 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lele53g1277 203 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 194 - -
Lele53g1277 203 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lele53g1277 203 Coils Coil 133 153 - -
Lele53g1277 203 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Lele53g1277 203 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Lele53g1277 203 Gene3D - 63 127 - -
Lele53g1277 203 SUPERFAMILY Homeodomain-like 53 121 IPR009057 -
Lele53g1277 203 MobiDBLite consensus disorder prediction 1 16 - -
Lele53g1277 203 SMART HOX_1 62 124 IPR001356 GO:0003677
Lele53g1277 203 MobiDBLite consensus disorder prediction 46 69 - -
Lele53g1277 203 FunFam Homeobox-leucine zipper protein 18 48 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1277 Lele-ChrLele53 21277734 21279892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1277 31 187 Homeobox Transcription Factor Family AT1G70920 61.728 7.22e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele53g1277 Homeodomain 9.7e-18 CL0123