Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1272 ATGTCGGAGAACGGTAATGGCGAGACGGGGATAAGCTATCTTCACGGCGACCTGGACTTGACCGTCTTCGAGGCTCGAAACTTGCCCAACATGGATGTCTCTGAGCATTTTCGCCGTTGCGTCACCGCCTGTGGCACTATCAAGTTCCATTCCGCTGGCGACCAGAAGACCCGCCGTCGCCGGAGGATTATCACTAGCGACTCATACGTCACCATCTCGGTGCCGCAGTCTACTGTTGCTCGCACGCGTGTGATAAAGAATACGCCGAACCCTCAGTGGAACGAGCGGTTCAATATCCCCTTGGCACACCCCGTGGAGTATTTGGAATTTCGAGTTAAAGACGACGACGCATTTGGTGCTCAGCTTGTGGGAACTGTCAATATTGCTGCACAGATAATTGCTTCCGGTGAGTTTATCGCCGGATGGTTCCCCATTCTTGGTTCTTCCGGTAAGCCTCCCAAGCCGGACACCGCTTTGCGTATAGAAATGAAGTTCATAGCCGTGGAAGAGAACTTGTTGTACCAGCGAGGCATTGCGGCTGATCCGGAGCATAAGGGCGTGAGGCAAACGTATTTTCCTGTGCGGAAGGGAAGCTCGGTGAGGTTGTACCAAGATGCCCATGTTCCTAACGGCATCCTACCTGTGATAAAGCTAGAGGGAGGAGAGCTTTACAAGCATGGAAAGTGTTGGGAGGATATTTGTTATGCCATATCTGAGGCTCATCATATGGTTTATCTTGTGGGTTGGTCAATCTACCACAAAGTAAAGATTGTGAGGGAACCTAGCAGGCCTTTGCCACGAGGGGGGGATTTAACCCTTGGTGAATTGCTCAAATACAAATCTGAAGAAGGGGTGCGAGTTCTCTTGCTGATTTGGGATGATAAGACTTCCCATGACAAGTTCTTCTTCAAGTCGGCTGGAGTAATGCAGACACATGATGAAGAAACCAGGAATTTTTTTAAGCATTCTTCCATTATGTGTGTTCTAGCACCTCGGTATGCTAGCAGCAAGTTGAGTTATATGAAGCAACAAGTTGTTGGAACTGTTTTCACACATCACCAAAAATGTGTCCTTGTGGACACGCAGGCTTTTGGTAATAACCGTAAGATAACTGCTTTTTTAGGAGGCCTTGATCTATGTGATGGTCGATATGACACACCTGAGCATCGACTTTTTCGTGATCTTGATACTGTATTTTCGGGTGACTTTCACAATCCTACATTTTCAGCTGGAACAAGGGCTCCTAGGCAACCGTGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTCTTAATTTTGAGCAGCGTTGGAGAAAAGCAACAAAGTGGAAAGAGTTTGGAATACTTTTCAAAAAGTCTTCCCATTGGCATGATGATGCTTTACTGAAAATAGATCGCATCTCATGGATATTAAGTCCTTCCTTGCCTCGCTCAAAGGATGGTAGCACAACTGTTCCAGGAGATAATCCCTTACTATGGGTCAACAGCGAAGATGATCCTGATAACTGGCACGTTCAGATATTCCGCTCCATTGATTCAGGATCCCTGAAAGGGTTTCCCAAAAGTGTTGATATTGCTCGGTCTCAGAATCTAACCTGCGCTAAAAATTTAGTAATAGATAAAAGCATTCAAACAGGATACATTCAAGCGATCAGATCTGCTCAACACTTTATCTATATTGAAAACCAATATTTTCTTGGATCATCGTATGCTTGGCCATCTTATAAGGATGCAGGAGCTGATAATCTCATTCCAATGGAACTAGCACTCAAAATTGCTAGTAAAATCAGAGCCAAGGAGAGATTTGCAGTGTATATTGTTTTGCCAATGTGGCCTGAGGGTGATCCTAATTCAGCAGCTATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGCAAACGATGTATGATGTTGTTGCAAGACAATTAAAATCAATGCAACTTGTTGATTTGCACCCACAAGATTACCTCAACTTCTATTGCCTTGGTAACCGGGAAGAATTCCATGAAGAAAACTCAAGTTCAAATGGTGCTTCGGTCTGCAGTTCGCATAAACATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTTGACGATGAGTATGTTATCGTGGGATCTGCTAATATAAATCAAAGGTCTATGGCTGGCACAAAAGATACTGAGATAGCTATGGGTGCATATCAACCTCATCACACTTGGTTTGCCAGGAAAAGACATCCGTATGGTCAGATCTATGGTTACAGAATGTCACTGTGGGCAGAGCATCTTGGGATGTTAGAGGCAAATTTTGAAGAACCAGAGAGTTTGGAATGTGTGCGTAAGGTGAATTCCATTGCGGAAGAGAATTGGAGAAGATACTCGTCGGAGGACTTCTCATCATTGCAGGGGCATATTCTGAAGTATCCTGTACAAGTAGATGCTGACGGGAAGGTTAGCCCTTTACCTGAATATGATTCTTTTGTGGATGTTGGCGGCAAAGTAATGGGATCTCATTTCCCTACAATTCCTGATATTCTAACAACATAG 2550 0.4463 MSENGNGETGISYLHGDLDLTVFEARNLPNMDVSEHFRRCVTACGTIKFHSAGDQKTRRRRRIITSDSYVTISVPQSTVARTRVIKNTPNPQWNERFNIPLAHPVEYLEFRVKDDDAFGAQLVGTVNIAAQIIASGEFIAGWFPILGSSGKPPKPDTALRIEMKFIAVEENLLYQRGIAADPEHKGVRQTYFPVRKGSSVRLYQDAHVPNGILPVIKLEGGELYKHGKCWEDICYAISEAHHMVYLVGWSIYHKVKIVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLLIWDDKTSHDKFFFKSAGVMQTHDEETRNFFKHSSIMCVLAPRYASSKLSYMKQQVVGTVFTHHQKCVLVDTQAFGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFSGDFHNPTFSAGTRAPRQPWHDLHCRIDGPAAYDVLLNFEQRWRKATKWKEFGILFKKSSHWHDDALLKIDRISWILSPSLPRSKDGSTTVPGDNPLLWVNSEDDPDNWHVQIFRSIDSGSLKGFPKSVDIARSQNLTCAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFLGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPNSAAMQEILFWQSQTMQTMYDVVARQLKSMQLVDLHPQDYLNFYCLGNREEFHEENSSSNGASVCSSHKHRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGAYQPHHTWFARKRHPYGQIYGYRMSLWAEHLGMLEANFEEPESLECVRKVNSIAEENWRRYSSEDFSSLQGHILKYPVQVDADGKVSPLPEYDSFVDVGGKVMGSHFPTIPDILTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1272 849 Pfam Phospholipase D C terminal 769 838 IPR024632 -
Lele53g1272 849 FunFam Phospholipase D delta 220 464 - -
Lele53g1272 849 SMART C2_3c 17 142 IPR000008 -
Lele53g1272 849 Pfam PLD-like domain 553 731 IPR025202 -
Lele53g1272 849 Gene3D Endonuclease Chain A 220 465 - -
Lele53g1272 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 694 721 IPR001736 GO:0003824
Lele53g1272 849 SMART pld_4 694 721 IPR001736 GO:0003824
Lele53g1272 849 SMART pld_4 348 383 IPR001736 GO:0003824
Lele53g1272 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 348 383 IPR001736 GO:0003824
Lele53g1272 849 Pfam C2 domain 16 145 IPR000008 -
Lele53g1272 849 SUPERFAMILY Phospholipase D/nuclease 545 778 - -
Lele53g1272 849 Gene3D C2 domain 11 165 IPR035892 -
Lele53g1272 849 Pfam Phospholipase D Active site motif 348 383 IPR001736 GO:0003824
Lele53g1272 849 PIRSF PLD_plant 3 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele53g1272 849 PANTHER PHOSPHOLIPASE D 11 838 IPR015679 -
Lele53g1272 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 150 IPR035892 -
Lele53g1272 849 SUPERFAMILY Phospholipase D/nuclease 187 456 - -
Lele53g1272 849 Gene3D Endonuclease Chain A 516 741 - -
Lele53g1272 849 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Lele53g1272 849 CDD C2_plant_PLD 13 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1272 Lele-ChrLele53 21240165 21244720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1272 11 685 Phospholipase D Gene Family (Wang group) AT4G35790 69.331 0.0 1026