Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele53g1255 | ATGACACGAAGAGACAGTATTCCATCTGGATTGGAAGAATCAGCACAGGCAAGTATGGCCGGAGAAGCGTCAACTCCAGGGGACCCGTCGTCAACGCAGGATTCGCCGACCTCTCCTTCGGTTGGGTTCAACACCGATCAACTTCCTTACACCAGTCGTGCCTCCGATGATGACGCTGAGGCTTCTGTTGATCTAGAGATTGTACGGGATGAACCTGAAGAAGTTGAGGAAGAGGAAGATGGGGAGGATCTTTACAATGACAATTTCATGGATGACTATCGGGGGATGGAGGAAAATGACCAGTACGAATCAATTGGATTAGATGACTCCTTGGAGGATAATAGGGATTTTGATCAGATCATGGAGGACCGAAGGGCAGCTGAGATGGAGCTCGAAGCCCGTGATGGTCGCCTTCCCGTTCGCAACAAGCTTCCTCAGCTTCTTTTCGACCAGGACACTGATGACGACAGCTATAGGCCTTCAAAAAGGGCTCGAGCTGATTTCAGGCCTCCACGTGGTGGAGGTAATGATAATATTGATGGGACACAAAGTTCACCTGGAAGGTCCCAAGCGCACTCAAGAGAGGACATTCCAATGACTGATCAAACAGAAGATGAGCGATATGATGATGAATATGGAGATGACAGTGAATATGAAATGTATCGTGTTCAAGGAACACTAAGAGAGTGGGTGACAAGAGATGAAGTGCGCCGCTTCATTGCCAAAAAATTCAAGGATTTCTTACTTACATACGTTAATTCAAAGAATGAACATGGTGACTTCGAATATGTGCGGCTGATAAATGAGATGGTATCAGCTAATAAGTGCAGTTTGGAGATTGATTACAAACAATTTATATATGTTCATCCTAATATTGCCATCTGGCTGGCTGATGCGCCTCAGTCTGTTCTAGAAATCCACTTGAACACCATGATCCGGATTGGGGGAGTTGTAACCAGGCGTTCTGGTGTCTTCCCCCAGCTGCAACAAGTAAAATATGACTGTAACAAATGTGGATCAATTCTGGGACCATTTTTCCAGAATTCTTATTCGGAAGTGAAAGTTGGATCTTGCCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGGAGGTCACTGGTATTTATTCGAACAACTTTGACCTGTCTCTGAACACAAAGAATGGTTTTCCGGTATTTGCCACTGTGGTTGAGGCAAATTATATTTCAAAGAAGCAAGATCTCTTTTCTTCCTACAAACTTACACAGGAGGATAAAGATGAGATCGAGAAGTTGGCTAAAGACCCCAGAATTGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATTTATGGTCATGAAGGCATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCTAGAAAAAAATGTTGAAGGAAAGCACCGCCTTCGAGGAGACATAAATGTTCTTCTTCTTGGTGATCCAGGAACAGCCAAGTCACAATTTTTGAAGTATGTTGAAAAGACTGGGCAGCGTGCTGTTTATACTACTGGTAAAGGGGCTTCTGCTGTAGGGCTCACTGCGGCAGTTCACAAGGATCCAGTCACCAGAGAGTGGACCCTTGAAGGGGGAGCACTTGTTCTAGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGATCAGGACAGGGTGAGTATTCATGAAGCTATGGAACAACAGAGTATAAGCATATCAAAAGCGGGCATTGTCACGTCTCTTCAGGCACGTTGCTCTGTCATTGCTGCTGCCAATCCTATTGGAGGAAGATATGACTCCTCGAAAACATTTTCTCAAAATGTTGAATTGACGGATCCTATCATTTCTCGTTTTGACATCCTCTGTGTTGTGAAGGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCGAAGTTTGTAGTTGACAGTCACTTCAAGTCACAGCCTAAGGGTGCTAACATGGATTCCTTACATGAACATGAAGAGGCTTGTGAAGCTTCCATGCCTCCTGATCCTGAGATAGTTCCTCAAGACCTGCTGAAGAAGTACATCACATATGCCAAGATGAATGTGTTTCCGAGGTTACATGATGCTGATATGGATAAACTGACACATGTTTATGCTGAACTACGGAGAGAATCTTCACATGGACAAGGAGTTCCCATTGCTGTAAGGCACATAGAATCAATGATAAGGATGTCCGAAGCCCATGCTAGAATGCATCTCAGGCAGCATATCACGCAAGAAGATGTGGACATGGCAATTCGTGTTCTACTTGATTCGTTCATTTCAACCCAGAAATTTGGGGTGCAGAAAGCCCTGCAGAAGAGCTTTAGGAAGTATATGACTTTCAAGAAGGACTACAATGAATTGCTCCTGTACCTTCTTCGTGAGCTTGTAAAGAATGCATTGCATTTTGAGAAAATTGTTCACGGATCCACTTCAAACCTCACGCTTGTCGAGGTCAGAGTAGATGATCTCTCCAACAAGGCGCAAGAGCATGAAATTTATGATCTTAAACCCTTTTTTAATAGCACTCACTTTGCAAGAGCCAATTTTGTACTGGATGAGGAGCGAGGAGTAATCAGGCATCGCCTTGCAAGATGA | 2607 | 0.4377 | MTRRDSIPSGLEESAQASMAGEASTPGDPSSTQDSPTSPSVGFNTDQLPYTSRASDDDAEASVDLEIVRDEPEEVEEEEDGEDLYNDNFMDDYRGMEENDQYESIGLDDSLEDNRDFDQIMEDRRAAEMELEARDGRLPVRNKLPQLLFDQDTDDDSYRPSKRARADFRPPRGGGNDNIDGTQSSPGRSQAHSREDIPMTDQTEDERYDDEYGDDSEYEMYRVQGTLREWVTRDEVRRFIAKKFKDFLLTYVNSKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGSILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQEVTGIYSNNFDLSLNTKNGFPVFATVVEANYISKKQDLFSSYKLTQEDKDEIEKLAKDPRIGERIIKSIAPSIYGHEGIKTAIALAMFGGLEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANMDSLHEHEEACEASMPPDPEIVPQDLLKKYITYAKMNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHITQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEKIVHGSTSNLTLVEVRVDDLSNKAQEHEIYDLKPFFNSTHFARANFVLDEERGVIRHRLAR | 868 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele53g1255 | 868 | SUPERFAMILY | Nucleic acid-binding proteins | 243 | 403 | IPR012340 | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
| Lele53g1255 | 868 | CDD | MCM2 | 437 | 761 | - | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 69 | 86 | - | - | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 309 | 326 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 367 | 381 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 332 | 344 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lele53g1255 | 868 | ProSiteProfiles | MCM family domain profile. | 434 | 640 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | Gene3D | - | 234 | 329 | - | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 148 | 170 | - | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Lele53g1255 | 868 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 444 | 765 | IPR027417 | - | |
| Lele53g1255 | 868 | Pfam | MCM N-terminal domain | 242 | 306 | IPR027925 | - | |
| Lele53g1255 | 868 | Pfam | MCM OB domain | 305 | 373 | IPR033762 | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 142 | 215 | - | - | |
| Lele53g1255 | 868 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 374 | 808 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | SMART | mcm | 296 | 763 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | ProSitePatterns | MCM family signature. | 543 | 551 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele53g1255 | 868 | FunFam | DNA helicase | 414 | 785 | - | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 7 | 52 | - | - | |
| Lele53g1255 | 868 | Gene3D | - | 414 | 785 | IPR027417 | - | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 104 | 123 | - | - | |
| Lele53g1255 | 868 | Pfam | MCM P-loop domain | 422 | 644 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | FunFam | DNA helicase | 327 | 379 | - | - | |
| Lele53g1255 | 868 | Pfam | Mini-chromosome maintenance protein 2 | 58 | 206 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lele53g1255 | 868 | Pfam | MCM AAA-lid domain | 678 | 762 | IPR041562 | - | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 535 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 490 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 614 | 622 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 563 | 576 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 587 | 599 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele53g1255 | 868 | MobiDBLite | consensus disorder prediction | 108 | 123 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele53g1255 | Lele-ChrLele53 | 21126443 | 21134897 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele53g1255 | 42 | 863 | Core DNA Replication Machinery Family | AT1G44900 | 68.415 | 0.0 | 1181 |