Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1249 ATGGAAGGTGAATATGTCGTTGATGATACGACGGAATCGAAGGGCACTGACGAAGTGAACATCAACATTCGTTGCTCCAATGGCTCTAAGTTTTGGGTTCAAATTAGTCTTGAGTCCACCGTCAGATCATTCAAGGAAGCTATCGCTCGATTGGAGGATGATCACATTGTTCATTTGGTTCGTGGATTTGCATCTGGTGCAACAACTACCACTGGTGGGACCAATGGCACAACAAATAGTGCAAGAATTCCGGGTGCTAATGGAGGTGGGGGTTTAGGAGCGTCTGGTTTTGGAGCCTCATTGTCTCCTGGGCTAGATCTCAATGGGACCAGGGGAAGTGGCATGAATGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAAGGATTTAACATGCTGAGGCGTATGTATGAAAATGTTCAGGAACCATTCTTAAATGCCACTATGATGGCAGGTGCTGGAAATGATGGCTCTAGCCTGTTTGCAGCACTGTCTGGAACTCAAGGTGGGCAAGCCAGCAATCTATCCACTAATTTCTCAATTACTAGTACTGAGGCAATTGCTGGTGCCCCCTCTCCCAATATTAGTCCACTTCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACCACAAGGTCAACTAGTGGAGGTAATGCTCAGTCATCCACTGCCTTGGAACTTGATCTGCCAGACCCTGAAGGTTTGGCGGGTGCTACACTGGATCCCACTTTGTTTACCCAGTTAATGCAGAACCCAAATATTTCACGAATGATGCAAAGGATCCTTTCCAACCCGCAGGCTTTGAATCAGATCCTTGGTGTCAATGTTGAGCAGCGTGGCATGCCTGATTTAACCTCTCATCTTAGACAAATGGTGAAAAACCTGGAGTTCCTTCGGTTTGTGTCTTCATCAGAGACATTTCAGGGAGCGCTTTTGTTTCAGCATGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACTCCGATTCAAGACACTCTGAATTCTTTGGAGTGTCTTCTTTGTACGCTGTATGATGACGGCCAGATCATCTATAGTCCTTCTGTACTAGCATTGAAATTTTGTATCTATGGTTTACTGGGAGCTATCTTTGCTCCGGTATTAAAGCATAAGAATTTCTTCCTAATTACAATCAAAATGTTTTTACAAGCAGCAGGGGAAATGAACAGCGCGTGGTTGGAAATGTTGTCAAATATGGTTGGTGGACTTGGAACTGGTAGCCTAGCTGCTCCAAACAGATCTGATGAGCCACCAGAGCAATTGTATGCAAGCCAGCTTTCGCAGCTTCAAGAAATGGGTTTCTTCGATGCACAAGAAAGGATAAGGGCCCTTATGGCCACAACAGGCAATGTTAATGCAGCAATTGAACGGCTTTTGGGGAACTCAGGTCAGTAG 1437 0.4544 MEGEYVVDDTTESKGTDEVNINIRCSNGSKFWVQISLESTVRSFKEAIARLEDDHIVHLVRGFASGATTTTGGTNGTTNSARIPGANGGGGLGASGFGASLSPGLDLNGTRGSGMNDRAMSNIESSPEGFNMLRRMYENVQEPFLNATMMAGAGNDGSSLFAALSGTQGGQASNLSTNFSITSTEAIAGAPSPNISPLPNPWTSTRAGGTQNNTTRSTSGGNAQSSTALELDLPDPEGLAGATLDPTLFTQLMQNPNISRMMQRILSNPQALNQILGVNVEQRGMPDLTSHLRQMVKNLEFLRFVSSSETFQGALLFQHGQQQSTQESGQTGRGTPIQDTLNSLECLLCTLYDDGQIIYSPSVLALKFCIYGLLGAIFAPVLKHKNFFLITIKMFLQAAGEMNSAWLEMLSNMVGGLGTGSLAAPNRSDEPPEQLYASQLSQLQEMGFFDAQERIRALMATTGNVNAAIERLLGNSGQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1249 478 SUPERFAMILY UBA-like 432 474 IPR009060 GO:0005515
Lele53g1249 478 SMART uba_6 436 474 IPR015940 -
Lele53g1249 478 FunFam Ubiquitin family protein 418 477 - -
Lele53g1249 478 MobiDBLite consensus disorder prediction 199 229 - -
Lele53g1249 478 MobiDBLite consensus disorder prediction 188 242 - -
Lele53g1249 478 Pfam UBA/TS-N domain 436 472 IPR015940 -
Lele53g1249 478 Gene3D - 418 478 - -
Lele53g1249 478 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 430 475 IPR015940 -
Lele53g1249 478 CDD UBA_PLICs 436 474 - -
Lele53g1249 478 PANTHER UBIQUILIN 16 50 IPR015496 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1249 Lele-ChrLele53 21096988 21101468 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0037 52 245607 246899 Lele53g1249 53 21096988 21101468 CCT
Lele49g0029 49 200040 202694 Lele53g1249 53 21096988 21101468 CCT
Lele50g0034 50 245776 249798 Lele53g1249 53 21096988 21101468 CCT
Lele51g0031 51 214202 217297 Lele53g1249 53 21096988 21101468 CCT
Lele53g1249 53 21096988 21101468 Lele53g1249 53 21096988 21101468 ECH
Lele53g1249 53 21096988 21101468 Lele56g0225 56 1819773 1823218 hybridization