Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1247 ATGCAAAACCCTTCGAAAGATTCCAGAACCACCTCTAAATCTGATCCTCCCTGTCACCCTGATCAAACCCCTCCTCCTCCTCCTTCTGATCCCTCTCAAACTGTCGCCGGTGATGTCACCGCCACTGAAGAAGGAGGAAGTAGCGTGGGACGTGTGGTGGCCATCTCCGACGCGGGGACAGTCCAAGCGGTGGACCCTACTCCTCCAGCCAGTGGTGAAGGTGGGTCCTCTGCGGCGTTGGTAAGTGTGGAAGGTGGAGTGGTGGTGGCTCCAACGCCGCCGGAGAAACAGTGTAAGCAGAAAAGAAAGTCGGCTCAACTGTCAGATCCTCCGCCGTGGCCTCCGAAATGCAACGAGTGCGGGAAAGAGTTCCCCAGTTGGAAAGCTGCTTTTGGACATATGAGGGCACACCCTGATCGCGAATATCGAGGTTTCTTCAAACCTCCTACTTCTTCATCATCATTATCATCACCAAGGCAACGCGTTCGTCTAGGAGAGAATATTAATACAGGTGGAGGAGAGAAGGGAGCATCATCGGCGGCTACCGGAGGGGTTGGGTTTGATCTGAATCAGCCGACGACGGAGGAAGTGGAATCTTCTAATTCTGAGGCAGCGACACACAGAAATGAAGCACTGGACTCTTCTACTTCGGCTGCAGAGAAGAAAGTCGGGTTTGACCTAAATCGACCTCCTCCTTCTGAAGATGATAATGATCAACACAAGCCCTAA 729 0.5281 MQNPSKDSRTTSKSDPPCHPDQTPPPPPSDPSQTVAGDVTATEEGGSSVGRVVAISDAGTVQAVDPTPPASGEGGSSAALVSVEGGVVVAPTPPEKQCKQKRKSAQLSDPPPWPPKCNECGKEFPSWKAAFGHMRAHPDREYRGFFKPPTSSSSLSSPRQRVRLGENINTGGGEKGASSAATGGVGFDLNQPTTEEVESSNSEAATHRNEALDSSTSAAEKKVGFDLNRPPPSEDDNDQHKP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1247 242 MobiDBLite consensus disorder prediction 140 242 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 227 242 - -
Lele53g1247 242 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Lele53g1247 242 MobiDBLite consensus disorder prediction 60 79 - -
Lele53g1247 242 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 17 153 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 1 54 - -
Lele53g1247 242 Pfam C2H2-type zinc finger 116 139 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 184 213 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 1 17 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 18 32 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 147 164 - -
Lele53g1247 242 MobiDBLite consensus disorder prediction 86 114 - -
Lele53g1247 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1247 Lele-ChrLele53 21086327 21087236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1247 117 154 C2H2 Transcription Factor Family AT4G35280 53.488 1.76e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g1247 zf-C2H2_6 9.1e-06 CL0361