Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1240 ATGCCTAAAGCGAATAAGAGCGCCTCCACAGTCGACGATAACCGGTTGAAGCGCAAGGGCGCTGGGGTTGGAAGGAAGCGTTCGAGAAAAGCTGCAAAGGATCCAAACAAGCCAAAAAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGACTTCAGAGAGCAGTATAAGAAGGATCATCCAGACAATAAATCAGTCACTGTTGTCGGTAAAGCTGGCGGTAATGAATGGAAAGCCATGTCTGATGATGAAAAAGCTCCATACGTTGCCAAGGCAGAGAAGAAGAAAGCGGAATATGAGCAAGCTATTAAAGCGTACAATATGAGATTGGCTGTGGGCAAAAATCCTTCAGAGGAAGCAGAGTCTGATAAATCAAAGTCAGAAGTCAATGACGATGATAGTGATGATAACGAAGAGCTAGAGACTCACTACATGAGTGGAAAAGTCACCCGCCACTTTGTTCCCGTTGACAAGATTCTGAAACCTGTTTTACTAGAATGTGTGACACCAATGACATGTTACTGGACTCTATCTTTGATTGTTCGCGGGGAATCAGAACTAATGTTGATTTTTAAGCTTCCCAAATCCATGGAGAAGATGGCTGGTATGAGCGATACTGAAATCCATGACCATGTCCAAGCCTATGCAAGGGGTGGGATACAGAGAATCATTACTTTTGTGGCTTTTAGTTGGAATAGACATTGA 705 0.4383 MPKANKSASTVDDNRLKRKGAGVGRKRSRKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPDNKSVTVVGKAGGNEWKAMSDDEKAPYVAKAEKKKAEYEQAIKAYNMRLAVGKNPSEEAESDKSKSEVNDDDSDDNEELETHYMSGKVTRHFVPVDKILKPVLLECVTPMTCYWTLSLIVRGESELMLIFKLPKSMEKMAGMSDTEIHDHVQAYARGGIQRIITFVAFSWNRH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1240 234 Pfam GPI-GlcNAc transferase complex, PIG-H component 143 192 IPR019328 -
Lele53g1240 234 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Lele53g1240 234 Gene3D High mobility group box domain 22 122 IPR036910 -
Lele53g1240 234 MobiDBLite consensus disorder prediction 20 34 - -
Lele53g1240 234 MobiDBLite consensus disorder prediction 113 139 - -
Lele53g1240 234 SUPERFAMILY HMG-box 25 109 IPR036910 -
Lele53g1240 234 SMART hmgende2 37 108 IPR009071 -
Lele53g1240 234 CDD HMGB-UBF_HMG-box 38 104 - -
Lele53g1240 234 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 138 IPR031061 -
Lele53g1240 234 MobiDBLite consensus disorder prediction 1 44 - -
Lele53g1240 234 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Lele53g1240 234 Coils Coil 89 109 - -
Lele53g1240 234 MobiDBLite consensus disorder prediction 116 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1240 Lele-ChrLele53 21040565 21046278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele53g1240 HMG_box 9.9e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1240 53 21040565 21046278 Lele53g1240 53 21040565 21046278 ECH
Lele53g1240 53 21040565 21046278 Lele54g1212 54 17664763 17669620 ECH
Lele53g1240 53 21040565 21046278 Lele55g0246 55 1503020 1507771 hybridization
Lele53g1240 53 21040565 21046278 Lele56g0233 56 1874633 1879345 hybridization