Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1234 ATGTCTTGCTCGTCGTCATCAGGCTCCGAGGAAGAGGATGAGGGCTTCGATTCCTACAGAAAAGGAGGCTACCACGCCGTCAGGGTTGGCGATCAGTTCGCCAGTGGGAGGTACATAGCACAGAGGAAGCTGGGGTGGGGTCAGTTTTCCACCGTCTGGCTCGCTTACGATACTCGCAATTCTACATATGTTGCTCTCAAAATCCAGAAAAGTGCAGCCCAGTTTGCTGAGGCCGCCCTTCATGAAATAAATGTTCTTTCATCCATTGCTGAGGGCAACCCTTCAAATTCAAAGTGTGTCATCCAATTGATTGACCACTTTAAGCATTCAGGCCCAAATGGGCAGCACCATTGCATGGTACTTGAGTTCCTTGGTGATAGCTTGCTTCGTCTGATCAGATATAGACGTTACAAAGGCCTTCCAATGAATAAAGTTAGAGAAATTTGTAAATGCATTTTGATTGGCTTGGATGACTTGCATAGAGAACTTGGTATACTCCACTCGGACCTAAAACCTGAAAATGTCCTTCTCTTATCCACCATTGATCCTGCCAAGGACCCTGTTAGATCTGGACAAAGCCCAATTCTGGAGAGGCCTGAGGGAAGCTTAAATATTGGATTTTCAAGTGTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGAAGAGCAGTTGCTAAAATATCAGGAAGAACTTCATCATTGGGAGAAGCTGGAGAGGCTACAAAATCTGATAGAAACATTGATGGAATTGATGTGCAATGCAAGATAGTAGATTTTGGAAATGCATGCTGGGCAGATAAGCCATTTGCAGAGGAAATCCAGACGAGGCAGTATAGAGCTCCTGAAGTTATACTGCAGGCTGGGTATTCCTTCTCTGCTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTCGCCACAGGTGATATGATGTTTACTCCCAAGCCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATACCCCGGAAGGTTGCCGTCAGTGGAGCAAAATCCAAGGATTACTTTGACAGACATGGGGATCTAAAAAGAATTAAGAGGCTAAAATTCTGGCCACTTGACAAATTTTTTATCGATAAATACAAATTTTCAGAGAGTGATGCTCGTGAGTTTTCAGGATTTATTTCCCCACTTCTGGATTTTTCGCCGGAGAAGCGGCCAACTGCACAAAAGTGTTTAGAACACCCATGGCTTAATGGTCAAGCCAATTCCAAATAA 1263 0.4434 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTRNSTYVALKIQKSAAQFAEAALHEINVLSSIAEGNPSNSKCVIQLIDHFKHSGPNGQHHCMVLEFLGDSLLRLIRYRRYKGLPMNKVREICKCILIGLDDLHRELGILHSDLKPENVLLLSTIDPAKDPVRSGQSPILERPEGSLNIGFSSVIEKKLKRRARRAVAKISGRTSSLGEAGEATKSDRNIDGIDVQCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSADMWSFACIAFELATGDMMFTPKPGQGFSEDEDHLALMMELLGKIPRKVAVSGAKSKDYFDRHGDLKRIKRLKFWPLDKFFIDKYKFSESDAREFSGFISPLLDFSPEKRPTAQKCLEHPWLNGQANSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1234 420 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 226 416 - -
Lele53g1234 420 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lele53g1234 420 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1234 420 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lele53g1234 420 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lele53g1234 420 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Lele53g1234 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lele53g1234 420 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1234 420 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Lele53g1234 420 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1234 420 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1234 420 CDD STKc_SRPK 27 413 - -
Lele53g1234 420 FunFam Protein kinase superfamily protein 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1234 Lele-ChrLele53 21008539 21011223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1234 4 414 EF-hand Containing Proteins AT5G22840 51.410 1.14e-168 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele53g1234 Pkinase 6.3e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0023 52 164013 167781 Lele53g1234 53 21008539 21011223 CCT
Lele49g0018 49 116378 124511 Lele53g1234 53 21008539 21011223 CCT
Lele50g0021 50 167248 169542 Lele53g1234 53 21008539 21011223 CCT
Lele51g0020 51 124573 135510 Lele53g1234 53 21008539 21011223 CCT
Lele53g1234 53 21008539 21011223 Lele50g0015 50 135306 139132 CCT
Lele53g1234 53 21008539 21011223 Lele55g0252 55 1530731 1533410 hybridization
Lele53g1234 53 21008539 21011223 Lele56g0904 56 7692298 7720369 hybridization