Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1227 ATGGTAGCTGGTGCGGTGCAGCAACAACATCAACCACAACCTCAATCGCAGCAACAAACTCAGCAAACTACAACCTCTGCTCAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTCTACTTCCTTGCTTCCCCGTTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAGTATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCTAAATGTTCCTTTCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGTCAGCCAGTGCTGGTGGATCATCTGCTCCCCCATCACAGAGTGCTGGTGGATCATCTGCACCCCCTTCACAGAGTGCACCGACTTCTGTATCACATGCACCTTATAATTCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCATGGACCAAATCCTAGCACCAGTAATAAAGTTCCCCAGGTTCAGGCAACTAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACCCAAGAAAGGAAAATTTCCCGAGCAAACGTTGCAAAGCCAGGTGCAAGCGTTGAAGCTAAGCCTGCCCAGAATGTTGAAACTGCTTCGCGTCGAAATGTAGTTGCTGTAGAGAGGCATGCACCACCAGCAATGGGATTTGATAACGAGGCGTCTAGATTCAAGGTAGTAAATACTCCGCCTATCACCAATGGAACCACTGCCCGGTCAAGCCATGTGTATCAATCTCATGGATTAGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAATTCTTGAGAGAATCCTCACCTGGCTTTGATGTGCTTGTAGCTGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGACCAATTTGGAAAAGCAAGAGGTCAAGACGGGATGAACTTGGACTCTGTGAATGAATATAATTTAGGACATTCTGTAGATTATAAATCTGTAGCAGATATTGAACAAGAAAGATATTGTGTGCCACACGGCTATGACTCGTATGATCACATTCAAGAGACATATGAATGGGACCACCGCAGGAATTCATCTGAAAGAATATTCCGGGGAACAACCCATTTGGAAAGGGTGACTCATCAGAGATCTGGCAGTCCTGAAAATGTTGGGGCTTCAGATCTTCGACATCGTTTATCTAAGCGCATGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCGCGCCAGAGCCCTGATGATGAGCAAAGTCACCGATTTTCTTCTCAAAAGGACACTCACCAGTTATCGCTGAATGAAAGCGCTCTCAGCAATCGCTTCCGAGGCAGGATAAAGCTTCCAACAAATGGTGGTGACGGATATGCAGAGAGGGAATCAGACAGGGGAAGAAATAGAAGCACATTGTCACCTGGAACTATGCAGGCTCCTCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAGGTTGCAAGAAGATTTTGAGAGGAAAAACTTCAGGGATCGACCTATAAGGAGAGAAATAAATGGGGACCAAGATGCTGATTTTGATGGACCAAAAAGTCTTTCTGAACTGCGAAATGGAAAGAACAAGGAGCATCCGTTGCTTGGGAAGAGGAAAAGCTTAAAGGAACAGCAGCAATCTGAGGATGATTTCATGTTTGAAGGTCCAAAACCTCTGAGTGAGATTTTGAAAGAGAAGAGAGCAACTGGAGTGGAAATAGGTTCCAAGAGTGGCAAATCGTCTGAGAATAAAGGAGACAATAAAGACAGAGAAGTTACTAATGGCTCAGAATACACCTCTGTCACAGACGCACAAAATGGCACTTTGCCTACAACTAAGGAAGATGTTAAGAACCAGGAATTGGAGTACACGGTTGAAGGAGATGCAGAAAAGACTGATGTAACTCATGATCGATCATTTGAAGAAGGAATGATGGACAGCGAAGTAATAGAAGAACAGGAGTATGAAGGTGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGGTGACGAGGGAGACTACAACTATGATGGAGGTGAAAATGCAGAGCAGGAAGAATACATGGATGATGAGGAGGATGGGGATGACTTCGCTAAGAAGATTGGTGTCATGCTCACATGA 2178 0.4449 MVAGAVQQQHQPQPQSQQQTQQTTTSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQSASAGGSSAPPSQSAGGSSAPPSQSAPTSVSHAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPSTSNKVPQVQATNQVTEPPSFKKVFSGPEKSTQERKISRANVAKPGASVEAKPAQNVETASRRNVVAVERHAPPAMGFDNEASRFKVVNTPPITNGTTARSSHVYQSHGLDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDREDQFGKARGQDGMNLDSVNEYNLGHSVDYKSVADIEQERYCVPHGYDSYDHIQETYEWDHRRNSSERIFRGTTHLERVTHQRSGSPENVGASDLRHRLSKRMRVNGLKSVVSHDYARQSPDDEQSHRFSSQKDTHQLSLNESALSNRFRGRIKLPTNGGDGYAERESDRGRNRSTLSPGTMQAPHPGRFRDRLRGRLQEDFERKNFRDRPIRREINGDQDADFDGPKSLSELRNGKNKEHPLLGKRKSLKEQQQSEDDFMFEGPKPLSEILKEKRATGVEIGSKSGKSSENKGDNKDREVTNGSEYTSVTDAQNGTLPTTKEDVKNQELEYTVEGDAEKTDVTHDRSFEEGMMDSEVIEEQEYEGDDQKDGDYYYEQGDEGDYNYDGGENAEQEEYMDDEEDGDDFAKKIGVMLT 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1227 725 MobiDBLite consensus disorder prediction 510 713 - -
Lele53g1227 725 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Lele53g1227 725 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lele53g1227 725 SMART c3hfinal6 65 88 IPR000571 GO:0046872
Lele53g1227 725 MobiDBLite consensus disorder prediction 633 663 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 1 28 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 94 128 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 687 712 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 612 632 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 425 440 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 510 568 - -
Lele53g1227 725 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Lele53g1227 725 MobiDBLite consensus disorder prediction 201 223 - -
Lele53g1227 725 ProSiteProfiles Zinc finger C3H1-type profile. 63 89 IPR000571 GO:0046872
Lele53g1227 725 SUPERFAMILY CCCH zinc finger 135 159 IPR036855 GO:0046872
Lele53g1227 725 Pfam Zinc-finger containing family 33 89 IPR041686 -
Lele53g1227 725 MobiDBLite consensus disorder prediction 597 611 - -
Lele53g1227 725 Gene3D - 19 90 - -
Lele53g1227 725 Gene3D - 126 184 - -
Lele53g1227 725 MobiDBLite consensus disorder prediction 388 498 - -
Lele53g1227 725 FunFam Zinc finger CCCH domain-containing protein 17 26 89 - -
Lele53g1227 725 ProSiteProfiles Zinc finger C3H1-type profile. 32 61 IPR000571 GO:0046872
Lele53g1227 725 MobiDBLite consensus disorder prediction 441 455 - -
Lele53g1227 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 160 IPR000571 GO:0046872
Lele53g1227 725 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 29 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1227 Lele-ChrLele53 20968355 20971696 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele53g1227 zf-CCCH_3 1.8e-11 CL0537