Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1224 ATGAAGCGCGATTTCTACGAAATTTCCGATGACGAATGGGATAACCATTCCTTTAAGCCCTCCCGAGTTCTAAAGAAAACACAGACTCCCACTCCTCCTCCGATCGAGTCCTTTGCTTTTCGGCCTGGTAATCATGAGAATTCGGACCAAAGTAGCGATGATTGCGTCCAAGTGGAAGAAAATTTGGAGGATGAGGATGCGGAGCTGGAGGGAGGTAAGTCTGGTATAGGGGCAAATCGTGGCCGTCGATTCGTTGTCGACGACGAGGAGAGCGATAGGGATGTTGCAGAAGTGTATGAAATAGAGTCAACGGATGAGGATGAAGTAGAAGAGGAGGAAGCGGATGAAAACGATATAGTGGGGAGGGCTTTGTACAAGTGTGCGAAAATATCTGCAGAATTGAAAAAAGAGCTATATGGATCATCGGGGACTGCTTGCGATCGGTATTCTGAGGCAGAATCTTCTTCAGTGAGAATTGTAAACCAGGATGATATTGATGTGGCTTGCGGGTCTGAGGACTCTGATTTTCAGCCTATCCTCAAGCCATATCAGCTGGTTGGTGTCAATTTTTTGCTTTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATCTAACCTTGTTGAAACGCCTGCACAATGATCCTGGTCCACATCTTATAGTGTGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGATGAAAAGGTGGTGCCCATCCTTTTCTGTTCTACAATACCATGGCTCTGGACGAGCAACATACTTCAATGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTATGCTATTCACTTTTTGAGCGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAGAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCTAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCAGGTATTTTTGCTACAGAAGATGTTGACTTGAAAAAGTTACTGAACACCGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGGCCTTTTATTTTACGGCGACTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAAGTGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAGCTCGAATAGCAAAATGTTCAGGGCCTAGCTCTAACAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCGAATCTATAGCGAAGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCAGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGCGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAGCAGACTTTCTTCCTTCACTTAAAAAAGGTGGTCATCGTGTTTTAATATTTAGTCAATGGACGTCTATGCTTGATATATTGGAGTGGACACTTGATGTCATTGGATTGACCTACAGACGGCTTGATGGAAGTACGCAGGTAACTGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCTATATTTGCTTGCTTGCTTTCTACAAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAACCCACAGATTGATAGACAGGCAGAGGATCGTTGTCATAGGATAGGTCAAACGAAGCCCGTAACTATATATCGGCTGGTGACCAAGGGTACAGTTGACGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCTGGCGTGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTATTGGGTTAA 2193 0.4259 MKRDFYEISDDEWDNHSFKPSRVLKKTQTPTPPPIESFAFRPGNHENSDQSSDDCVQVEENLEDEDAELEGGKSGIGANRGRRFVVDDEESDRDVAEVYEIESTDEDEVEEEEADENDIVGRALYKCAKISAELKKELYGSSGTACDRYSEAESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDPGPHLIVCPASVLENWEREMKRWCPSFSVLQYHGSGRATYFNELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPGIFATEDVDLKKLLNTEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQARIAKCSGPSSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSEEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGVLPDRSVMSSAKCRALADFLPSLKKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGVEMDDKGDMPEKTMGEILSAILLG 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1224 730 SMART helicmild6 585 668 IPR001650 -
Lele53g1224 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 709 IPR027417 -
Lele53g1224 730 CDD SF2_C_SNF 546 679 - -
Lele53g1224 730 MobiDBLite consensus disorder prediction 1 91 - -
Lele53g1224 730 Gene3D - 161 430 IPR038718 -
Lele53g1224 730 Pfam SNF2-related domain 200 486 IPR000330 GO:0005524|GO:0140658
Lele53g1224 730 Gene3D - 541 725 IPR027417 -
Lele53g1224 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 371 IPR014001 -
Lele53g1224 730 SMART ultradead3 176 381 IPR014001 -
Lele53g1224 730 FunFam Protein CHROMATIN REMODELING 19 isoform A 151 429 - -
Lele53g1224 730 MobiDBLite consensus disorder prediction 1 21 - -
Lele53g1224 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 406 IPR027417 -
Lele53g1224 730 Pfam Helicase conserved C-terminal domain 556 668 IPR001650 -
Lele53g1224 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 721 IPR001650 -
Lele53g1224 730 PANTHER SNF2/RAD54 HELICASE FAMILY 65 708 - -
Lele53g1224 730 CDD DEXHc_Snf 180 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1224 Lele-ChrLele53 20942762 20948297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1224 201 695 RAD5 or RAD16-like Gene Family AT5G22750 27.524 3.33e-47 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele53g1224 SNF2_N 2.8e-52 CL0023