Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1207 ATGACTCGTATTCTCAAGTCCGCCGACAACTCCACGTCCGTCGCTGCCGCTGCTACCATCGCCGCAGCTGCCCCGCCTCCTGAGGCCGTCGCTTTGGAATCAGACTTCGTTGTGATCCTCGCGTCTCTGCTTTGCGCTCTCATATGCACGGTCGCACTCATAGCCGTCTGTCGCTGCACCTGGTTCCGACGCGGTGGATCCGGAGCCGGCGGCGGAGCTCCGGGGAAGTCTCTGGCGAATAAAGGTCTGAAGAAGAAGGTGCTCCAATCCATGCCGAAATTCACTTACATTGACAGCAATTCAGAGAAGTGGTTGGCCACGTCGGAGTGCGCGATTTGCTTGGCCGAGTTCGTCGGAGCCGACGAGATCCGAGTTCTTCCGCAGTGCGGCCATGGCTTCCACGCGGCGTGCATAGACACTTGGCTTGGATCACACTCTTCGTGCCCTTCGTGTCGGCAGATTCTTGCTCTGCCTCCGAGGTGCCGTAGGTGCGGCCTTTACCCGGAGGTTCGCTGTGGAGAAGCCACCAGAATTAGCGGTGGTGAACCGGAGCTCAAGTCCAGACATGACGATAATGCCACTACTGCCAGTAATGATTATGTTAATAGCTCAACTAGTGATCATCAAGGGCCCAGAAATAATACTGGATACCTTCCATAA 660 0.5636 MTRILKSADNSTSVAAAATIAAAAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAGGGAPGKSLANKGLKKKVLQSMPKFTYIDSNSEKWLATSECAICLAEFVGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILALPPRCRRCGLYPEVRCGEATRISGGEPELKSRHDDNATTASNDYVNSSTSDHQGPRNNTGYLP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1207 219 FunFam E3 ubiquitin-protein ligase ATL6 73 158 - -
Lele53g1207 219 SMART ring_2 110 151 IPR001841 -
Lele53g1207 219 Pfam Ring finger domain 109 152 IPR001841 -
Lele53g1207 219 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Lele53g1207 219 SUPERFAMILY RING/U-box 88 161 - -
Lele53g1207 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 156 IPR013083 -
Lele53g1207 219 MobiDBLite consensus disorder prediction 181 219 - -
Lele53g1207 219 MobiDBLite consensus disorder prediction 194 219 - -
Lele53g1207 219 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 24 165 - -
Lele53g1207 219 SMART FANCL_C_2 106 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1207 Lele-ChrLele53 20843439 20844098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1207 31 191 C3H Transcription Factor Family AT1G20823 56.725 6.56e-55 172