Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1181 ATGAGATATATCCGAATTCAGTCTTCTCCTTCAGCCTTCACTTCTTCCGTGCCGTCTTCTCTAGTCCTCGTCGTAGCTGCGTCTCCACTTCTTCTTTGTACTTTTTGGGCTTTGCTCATCTTCTCTGTTAAACGTTCTTGTTGGCCGCCGGTCGCCTCTCCATTACAGCCACAGGTTGTCTTCGGGGTTCAACTTATTCTTGGAAGTTGGATTGAGACGCAGACTAAGGCTCAGAACTGCAATTTTGAAGTCAATTTCATAGTAGATATGGAAGAAGAAGATGATTATGTGGAGTATGTGCCTGTGGCCAAGCGTAGGGCCATGGAGGCTCAGAAGATTCTTCAGCGAAAAGGAAAATCCTGCTCAGCAGTTGATGATGATTTGGATAAATCAACAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGGTTAGTCCGACAGAGCAGATTGTTCAACAAGAAAAAGAGATGATTGAGAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACAGAGCCTTTGCCTACTGGATGGAAGCCACCTTTATCAATTAGAAGAATGTCTAAACAAGCATGTGATTTGATTCGGAAGCAGTGGCATATAATAGTCGATGGTGAAGACATCCCACCCCCAATCAAGAATTTCAAGGATATGAGGTTTCCTGAGCCAATTTTGAAGAAGTTGAAAGAAAAAGGGATTGTTCAACCAACACCTATTCAAGTACAAGGCCTTCCTGTGATCTTATCCGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTCTAGTCTTTGTGTTGCCAATGATCATGGTGGCACTGCAAGAGGAAGTTATGATGCCTATTGCTCCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCATCAAGGGAATTGGCTAGACAGACGTATGAAGTGGTTGAACAATTCTTGATACCTCTGAGAGAAGCTGGATATCCTGAGCTTAGGCCATTGCTATGTATTGGTGGGGTAGATATGAGATCGCAGCTAGACGTTGTGAAGAAGGGTGTTCACATTGTTATTGCCACCCCTGGGAGGTTAAAGGATATGTTAGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACTTTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGGCAGACGCTCTTATTTTCTGCCACTATGCCAACGAAAATTCAGAATTTTGCTAGAAGTGCTCTCGTGAAACCCGTCATTGTCAATGTGGGGCGAGCAGGAGCGGCAAATCTTGATGTAATACAGGAGGTAGAGTATGTTAAGCAAGAGGCGAAAATAGTGTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTTTGTGAGAACAAGGCTGATGTGGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAAGATCAGGAAGAAAGAGAGTATGCAATTGCAGCCTTTAAGGCTGGAAAGAAAGACGTATTGGTTGCAACTGATGTTGCATCCAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATTGGACGAACTGGACGATGTGGCAAGACTGGCATAGCAACGACGTTCATTAACAAGAATCAAACTGAGACAACCTTACTTGACTTGAAACATCTGTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCAACGGAATATAACGAGGAAATCACAGATAAAAGTGGGGTCAAGGGCTGTGCGTATTGTGGTGGGCTTGGTCATCGCATTCGTGACTGCCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGGAGGGATTATTTTGGCTCTGGTGGATACAGAGGAGAAATATGA 2034 0.4282 MRYIRIQSSPSAFTSSVPSSLVLVVAASPLLLCTFWALLIFSVKRSCWPPVASPLQPQVVFGVQLILGSWIETQTKAQNCNFEVNFIVDMEEEDDYVEYVPVAKRRAMEAQKILQRKGKSCSAVDDDLDKSTVAEAKPSLLVKVSQLKRDQPEVSPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLSIRRMSKQACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEVMMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRSQLDVVKKGVHIVIATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPTEYNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1181 677 ProSiteProfiles Zinc finger CCHC-type profile. 636 651 IPR001878 GO:0003676|GO:0008270
Lele53g1181 677 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 617 - -
Lele53g1181 677 SMART ultradead3 251 462 IPR014001 -
Lele53g1181 677 Coils Coil 589 609 - -
Lele53g1181 677 Gene3D - 457 619 IPR027417 -
Lele53g1181 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 593 IPR027417 -
Lele53g1181 677 SMART c2hcfinal6 635 651 IPR001878 GO:0003676|GO:0008270
Lele53g1181 677 Pfam DEAD/DEAH box helicase 256 435 IPR011545 GO:0003676|GO:0005524
Lele53g1181 677 FunFam Probable ATP-dependent RNA helicase DDX41 199 448 - -
Lele53g1181 677 CDD DEADc_DDX41 243 448 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele53g1181 677 Pfam Zinc knuckle 635 651 IPR001878 GO:0003676|GO:0008270
Lele53g1181 677 SMART helicmild6 497 578 IPR001650 -
Lele53g1181 677 Gene3D - 200 451 IPR027417 -
Lele53g1181 677 SUPERFAMILY Retrovirus zinc finger-like domains 635 656 IPR036875 GO:0003676|GO:0008270
Lele53g1181 677 Pfam Helicase conserved C-terminal domain 471 578 IPR001650 -
Lele53g1181 677 CDD SF2_C_DEAD 459 587 - -
Lele53g1181 677 FunFam Probable ATP-dependent RNA helicase DDX41 457 619 - -
Lele53g1181 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 447 IPR014001 -
Lele53g1181 677 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Lele53g1181 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 618 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1181 Lele-ChrLele53 20649195 20652966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1181 220 617 Eukaryotic Initiation Factors Gene Family AT3G19760 31.017 7.55e-56 194