Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1179 ATGAAGTTTCGCCAAAAGGCCAATGTCGTTTCAGTCCCGCTTGGTTTTGGGATATGGAAAACGAGAATAGAATTCAATTTTGCGGCCGCTAGAAGCGTTGTTGCTTGGAGATTTCTGGAGGCATTGGTGCGAACATGGGATCCAGTAGTAGCAAAGCCACTTCCTCTTGCAGTTCGTCGTCATCTTCCGGCAGTTTTCGGAAGGTTCGATCTAAGAAAGGGCATAGAGGATTTCAGTCGTATTGTCTTGGAACAACCTCTGGATCTCATGACGAACAGATTGGATTTCTTTGAGAATTTTTCTTACACTTTTTTGTTGAAGAACCTGGGAACACGTATCTTCCGATATACTGCTACACATACTTGCACCTTGAATTTTAAGTATGAAGATGATTTGATATGTTTCGCTACGGTTCAAGCAATAGATACAAAATCTATCAAGTGGACAAGGAATAAAGTAAATGGCCGTAGTGTCACATACAACTGTTGCACTGAAACACGCTCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATGAAAAGAAAACATCTGATGGCATGCCTTCTAACATTCAACTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTACTCGTACTTCTTCAACTGGTAGTCAATTTCTTTCTCGGTTTAGCCTTATTCCTGGTAATTTAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACAATGTCAATATTAAACAATGAAGATGATCTTAGTCTGCATCCAAGACCCACTGGCAGCTTGGTTAATAGAAATGAAACTCAACAATGTACTGACTTGTTTCCTCCTTCTTTTGGTAACCGAATGCCTATACAACATTATGAAGATACTCATAATAGTTTATGTTCTAACTTTTCAGCATCAGATTCATCTGGCAACTTTCAGAATAATCCCTCAGTTTCTTCTATACATAATGTGGTTAGAGATGGAAATGCTTCATGCGAAGGGCTGGATATAAACTTGTTTTCTCCAAGAATTGTTGAGGGTCGACAAAATGGAGCTCGAGAACCTGTTGAAAGAAATTTTCGGTATGGCCGGACTCTAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGTCAATCAACTTCATCTGATGTGAGCTTTTGCCCCCAGCAACAAGAGAGAGAAGCAAGGGATACCAGAGAGGATAGTGAAAGACAAGCTGGGGAGGGAGATTCGAGAATATTACCATCTTCTTCTATGTCTGGTTATCCTCCATCCAGTATGTCTAACTCCTTATTCAACACCCAAGACTATGAGGTTGAGAATTTGAGGTCAAGAGAAGCTAGGTACCAAGATCTTCAGGAACACAGATCCAACTTCCTTGAACGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATCCAAGTTCAATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGCAGTTTTATCTTCTCGCCCTTCTTTGTCTTCCATTGGATCTGTTCCTGCGCCCAATGATGTTGTGGAGTCCTTGCCAGTCAGATTATACACAAACTTGCATAAACATCAAGAGGATGCTGCCCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGTATGCGTGAGCTGCCTTGCCATCACCAATTTCATAGAACATGCGTGGACAAGTGGCTCAAGGAAATTCATAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACTCTCAATGGAGAACTAA 1953 0.4153 MKFRQKANVVSVPLGFGIWKTRIEFNFAAARSVVAWRFLEALVRTWDPVVAKPLPLAVRRHLPAVFGRFDLRKGIEDFSRIVLEQPLDLMTNRLDFFENFSYTFLLKNLGTRIFRYTATHTCTLNFKYEDDLICFATVQAIDTKSIKWTRNKVNGRSVTYNCCTETRSNEMKSKSFRDDEKKTSDGMPSNIQLNEWAQTSISSNSSRTRSRSTRTSSTGSQFLSRFSLIPGNLSFRLSRTTSLGSSRSCHVSSTTMSILNNEDDLSLHPRPTGSLVNRNETQQCTDLFPPSFGNRMPIQHYEDTHNSLCSNFSASDSSGNFQNNPSVSSIHNVVRDGNASCEGLDINLFSPRIVEGRQNGAREPVERNFRYGRTLSVGRLRNRVLRQSTSSDVSFCPQQQEREARDTREDSERQAGEGDSRILPSSSMSGYPPSSMSNSLFNTQDYEVENLRSREARYQDLQEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDPSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSLSSIGSVPAPNDVVESLPVRLYTNLHKHQEDAAQCYICLVEYEDGDSMRELPCHHQFHRTCVDKWLKEIHRVCPLCRRDICISDSLSMEN 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1179 650 MobiDBLite consensus disorder prediction 388 440 - -
Lele53g1179 650 MobiDBLite consensus disorder prediction 420 440 - -
Lele53g1179 650 FunFam Putative RING zinc finger domain superfamily protein 564 642 - -
Lele53g1179 650 MobiDBLite consensus disorder prediction 399 417 - -
Lele53g1179 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 642 IPR013083 -
Lele53g1179 650 ProSiteProfiles Zinc finger RING-type profile. 595 637 IPR001841 -
Lele53g1179 650 SMART ring_2 595 636 IPR001841 -
Lele53g1179 650 MobiDBLite consensus disorder prediction 198 218 - -
Lele53g1179 650 SUPERFAMILY RING/U-box 573 643 - -
Lele53g1179 650 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 146 649 - -
Lele53g1179 650 Pfam Ring finger domain 594 637 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1179 Lele-ChrLele53 20634643 20640100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1179 324 644 C3H Transcription Factor Family AT5G45290 59.172 4.86e-109 338