Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1173 ATGGGAAGCGCTTCTGCAGATTACACGACGGGGACAACATGGTTATGGGCAATGGCGAATCTGGTGAAGAATCAAAGAGTACAAGAGAATCTGTTTGATGAAATAAACAAAGTTGTGAAACCAGATAAAGAAATCGAAGAGAAGCATTTGAAGATGCCATATTTGCAGGCCATAGTTTTGGAGACGATTCGAAGGCACACACCTGGGCACTTCATATTACCGAGATCAGTAGCACTAGACGCTGAAATGGAAGGTTACTCAATACCAAGAAATGCGAGGATGAATTTTCTGGTGGCTGAATTAGCTAGGGTGGGACCCAAATAATCTCGAGCAAATCTCAAGCAATTCGGAGGGCGAGGAGGTGTTGAACTAGTTACTTTACAGCTCAATCTCCAGTTCTCACGCTTTTGCATCCAATATCGAACCGAGTGGTCTGACCACGAATCATATGAGCTTACTCTTCTGTATAGATGCATGTTGGAAGCATGCATTTTTCATACGGTTGTCTCAGATGACTTGGTGGCTATATTACGCTTAAACACTGTTGCTATGGGCGTTTGTCTGATGAAATGGCAATTGCCATGGCCATGGCTTCTTTATGTTATGCTGATATGTCATGTAATCAATAGGAATGAAGCAATCAGTCCTGATGGAGAGGCACTTCTTAGCTTCAGGACAGCAGTTATCCCCAATAGTGACCTGTTACCTTGGAGGCCTGAGGATCCGGACCCATGTAAATGGAAAGGAGTAGCATGTGATCCCAAAACCAAGAGAGTGACAAATCTGTTTCTAGATCATCTTAAGTTAAGTGGGTCTATTTCAGCCGACCTTGGGAAGCTAGAGCATCTGAGGATTCTCAATGTGTCGTTCAATTTTCTAGTTGGACCAATACCTTTGGATGGTGTTCTTGCCAACTTCACTGAAAGCTCCTTTCTTGGTAATCTTGGTTTGTGTGGAGTGCAAATCAATACAACATGCAAGAATAATGGTTCGCCCAATTCCAATCCTCAATCTTCAACGTCAGTGGCACTTATGTGCTTCTGGGGTTGCTTTCTTTATAAGAAGTTTGGCAAAAATCACGTAGAAAGTCTAGCAATGGATTTCTGTGGAGGGGCATCTATTGTGATGTTTCATGGAGATCTACCATATTCTTCAAAGGATATTATTAAAAGACTAGAGACTTTAAATGAAGAACACATAATTGGTTGTGGAGGATTCGGAACAGTTTATAGGCTTGCAATGGATGATGGGAATGTATTTGCTTTGAAAAGGATTGTAAAGTTAAATGAGGGCTTCGATCGATTTTTTGAGAGGGAGCATGAAATTCTTGGAAGCATAAAACACAGATACCTTGTGAACTTAAGAGGATATTGCAATTCACCTTCATCAAAGTTGTTAATATATGATTACCTACCTGGTGGTAGTCTTGATGAAGCTCTTCATGCTAAAATGTGGGTGGATCTTTTCAACATGATAGCATTTTATAGGTTTTATTACTTAGTGCACCTTGAGATTGAGGTCTCAGTTGTAACTGTTTTTCAACATAATGACGTTAATACTGTCAACCTGTGCATCATCTGTTGCTCCATGGCAGAATATATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTTTATAGTTTTGGTGTCCTAGTACTCGAAGTGTTGAGTGGAAAGCGACCAACAGATGCATCGTTCATTGAGAAGGGCCTCAATATTGTTGGTAGAGAGCCTGGATGCGTTACTCTCTGTAGCTATACAGTGTGTATCGTCAAGTCCGGAAGAGCGACCCACAATGCACAGAGTGGTCCAGTTGATTGA 1821 0.4141 MGSASADYTTGTTWLWAMANLVKNQRVQENLFDEINKVVKPDKEIEEKHLKMPYLQAIVLETIRRHTPGHFILPRSVALDAEMEGYSIPRNARMNFLVAELARVGPKXSRANLKQFGGRGGVELVTLQLNLQFSRFCIQYRTEWSDHESYELTLLYRCMLEACIFHTVVSDDLVAILRLNTVAMGVCLMKWQLPWPWLLYVMLICHVINRNEAISPDGEALLSFRTAVIPNSDLLPWRPEDPDPCKWKGVACDPKTKRVTNLFLDHLKLSGSISADLGKLEHLRILNVSFNFLVGPIPLDGVLANFTESSFLGNLGLCGVQINTTCKNNGSPNSNPQSSTSVALMCFWGCFLYKKFGKNHVESLAMDFCGGASIVMFHGDLPYSSKDIIKRLETLNEEHIIGCGGFGTVYRLAMDDGNVFALKRIVKLNEGFDRFFEREHEILGSIKHRYLVNLRGYCNSPSSKLLIYDYLPGGSLDEALHAKMWVDLFNMIAFYRFYYLVHLEIEVSVVTVFQHNDVNTVNLCIICCSMAEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGREPGCVTLCSYTVCIVKSGRATHNAQSGPVD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1173 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 199 286 - -
Lele53g1173 606 Pfam Leucine rich repeat N-terminal domain 216 253 IPR013210 -
Lele53g1173 606 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 369 470 - -
Lele53g1173 606 Pfam Cytochrome P450 9 97 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele53g1173 606 ProSiteProfiles Protein kinase domain profile. 395 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1173 606 Gene3D Ribonuclease Inhibitor 213 340 IPR032675 -
Lele53g1173 606 Gene3D Phosphorylase Kinase; domain 1 372 470 - -
Lele53g1173 606 Pfam Protein kinase domain 397 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g1173 606 SUPERFAMILY Protein kinase-like (PK-like) 375 569 IPR011009 -
Lele53g1173 606 Gene3D Cytochrome P450 4 103 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele53g1173 606 Gene3D Transferase(Phosphotransferase) domain 1 511 582 - -
Lele53g1173 606 ProSitePatterns Protein kinases ATP-binding region signature. 401 427 IPR017441 GO:0005524
Lele53g1173 606 SUPERFAMILY L domain-like 226 299 - -
Lele53g1173 606 SUPERFAMILY Cytochrome P450 9 98 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1173 Lele-ChrLele53 20606622 20613744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1173 271 575 Receptor kinase-like Gene Family AT2G35620 59.777 1.78e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lele53g1173 Pkinase 4.7e-11 CL0016