Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1164 ATGGCATATGATTCCGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGACGCTGGCCAGGGCAACCGTTTGCTGGGATTCATGTTTGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGACAAGCTGGGTCCTTCCCTGACAGATATAGATTTGTCAGGAAAATCGCCACAAACACCACCTGACATTGTCGAACAAGACTATGGTGAGAAAGCTGATGGTGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCAAATGAAGAGGAACATTTATTGCCCAAAAAGGATTTTCTTTCTGTTGAAGCCTCTATTGAAGCTTTGAAATCCAGATCTTCTGTCTTTGATGATGAAAATTATGACGAGGAATCTGAAAAGGAGCAAGACCTGGTGAATGACACTTCTGAAGTTAATAACATCTCTTCAACTGAGGAGCCGGTAGTGTCTCTCGTTGATGCATCTAAAGGAGAGAAAAGTGAAGAACTTGAATCCCATGATGGCTCACAGCAGTCTGAAGAATTGGACACTGACTTGCAAAAACTCCAGGAGGAAGGGCCTGAAGTTTTGAAAGGTTCTACTCCATTGCCTGTTTTATGTGTTGAAGATGGGATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCATGAACCTTTGAGAAAAGGAGGGAGGAGAGAGCAACGACCTTCTATTCCTAGAGATAGATACAAGTCCTTAAATATATCTGATACTGTAGAAGAGGATGAAGAGGTATTCTTCAGGGGTTCCTCTCACAGTCTCCTACTAAATAAAGAGGCTTGTGTAGTTCAAAATGGTATATCAGAAAGCAGTGATGCAGACTTGGATTTATCAAAATTTGGATTTCTTCGTGGGGCTGCCTCAATGACTGTGAAAGATGGCCCACAACAGAAGGACTCTTGTCTTAGTGCTGACCCAATGAAACAGAATTGCTCAGGCCTTGCTTGGGAAGGGAATTCTCTCTTGTGTGCTGATTTTTATCCCCTTGATCAGCAAGAGTGGGAAGATGAAATCATTTGGGGCAATTCCCCTGCTGCAAGTAACAATAATCATGAGAGCACTGAAATTTCTGGATCTGCATTGGGACCTCTAGGGTGTGATGAAGGAGATATTGAAAGTGGGATGCAAAATATCCAGTTGGAGCCGCCGAAGGAACTGGAAGAAAAAAATCATAGTGTTTTCTTGTGCAGCTCGCCTGTCTCATTAGAGCCCTTTGGTTCAAGGGATTCTTCAGGAGCTAAAACCAATTCATTGTCAAAGAATCTATTTCATCCGCAACTCTTAAGGTTAGAATCCAGACCTGAAGTGGATATCTCTAATCCTGCAGATGACGGAAGGGAGAATATATCTGAGGAGCATAATCAAAATGGCCTAGTAAAGCATTTCACTAAACTGACATTGCAAAACCAGGATATGATGGAAGGGTCTTGGTTAGACAAGATTATATGGGATGAGGTCAATAGACCTATTGTGAAACCAAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAATTTTGGATAGTAAGGAGGGTAGACATCTCCGCTTGCATGCAGGGGCAATGGTTTTAACTCGTCCTTTAAAATCAAGCAATGGAGATTCTTCTGAGCTACTTGGACATGGAAATCAGCATGGATGGAGATCCATTGCTAATGATAAACATTATTCAAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGTGTAAAAGTTTTTCACTCTCAACCTGCGCTGAAGCTTCAGACAATGAAATTGAAACTGAGCAACAAAGATATTACCAATTTTCACCGACCACGAGCTTTATGGTATCCTCATGACAATGAGATGGCTGTCAAAGAACAAGGGAAACTGCCGACACAAGGACCGATGAAAATTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTCGATTACGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCATCTAAAAAGCTAGATTTCAAACCATTGGAAACAGTGAAAATATTTTATCTTGGGAAGGAACTTGAAGATCAGAAATCACTTGCTGCACAAAATGTTCAACCAAATTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAATCCTTGCGTCCACCTGGGGCATTCAAGAAAAAGTCTGATCTATCTGTTAAAGATGGACATGTTTTTCTAATGGAGTACTGTGAAGAAAGACCTTTATTATTGAGCAATGCTGGAATGGGTGCCAGACTTTGCACATACTATCAAAAATGTTCTCCAGATGATCAAGGTGGCTCTTTCTTACGCAACACAAATAGTAGCTTGGGGCATGTGATTTCATTGGATCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAACCTGGCTGCAGTCAGTCATCACTGGAGACAAACATGTATAGGGCACCCATATTTCCTCATAAAGTGTCATTAACTGACTACCTGCTAGTTCGGTCATCGAAGGGAAAGCTATCATTAAGACGGATTGATAAAATTAACGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTATTGTCAACTGGAAGTAAGAATCTTCAGACATATATGATGAACAGGCTACTGTTACACATATGCCGTGAATTTCAAGCTGCAGAGAAGCGACACTTACCTCCATGCATTCGTGTTGATGAGCTGCTGTCACAGTTTCCTTACCTATCAGAAGCTTCTTTTCGCAAGAAAATTAAGGAATATGCTATTTTACAGAAGGGAACAAATGGACAGTTGATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCGGAGGATGAATTGAGAAAGATGGTGACACCAGAGCTTGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTATACCGTCTAAAACATTTAGGAATTACTGAAACTCATCCTACTAATATATCTTCTGCTATGAGTCGGCTTCCTGATGAAGCAATTGCACTGGCTGCCGCATCGCACATTGAGAGGGAGCTGCAAATCACTCCATGGAACCTGAGTAGCAATTTTGTTGCCTGCACAAGCCAGGGGAAGGAAAATATTGAGCGATTGGAAATTACTGGTGTTGGCGATCCATCTGGGCGTGGTTTGGGTTTCAGCTATGCTCGGGCTCCTCCAAAGGCACCAGTGTCAAGCGCAGTGGTGAAGAAGAAAACAGCTGCTGCCCGGGGTGGTTCCACTGTTACTGGAACAGATGCTGATCTACGCAGATTAAGCATGGAGGCTGCACGAGAGGTGCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATAGCAAAGCAAACCAGGTGGCATCGAATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCAGCATCTGGAGTTAAGGTTGACCCAACAACTATTGGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTTTCAGCTGTGAATGGTGATGAAAATGAGAGTGATTCTGAAGGAAACAGTGATCTAGATTCTTTTGCTGGTGATCTTGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAAGGTACCGATGATTTTAAACGTGACAAGGCTGATGGCGTCAAGGGTCTTAAAATGAGAAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGACGAAGCTGCTGAGGCTGCTGAACTCTGCAGATTACTCATGGATGATGATGAAGATGAGAGGAAGAAAAAGAAGACTAAATTTGTTGTGGAGGAAGCAGGAATAATTCCAAAACTACAGCCAAGATTCGTCTTTGACAATACAGATCAGGTGAAGCAAATAACTAATATTGTGCAACTAGATGGAGTCAATATATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCATTTCTGCTAAAAAGGGCAAATCAGTGAAGGTCAATAAAACTAAGAAGACTGACCTTTCACCTATTAGTGTGGCAAATAAGAAAATAAAGTTAAATATTGGGGAACCGCCAAAGGTATTCAAGGAGAAAAAGCCATCAAGGGAAAGTTTTGTTTGTGGAGCGTGTGGCCAGCTTGGGCACATGAGAACCAACAAGAACTGTCCAAAATACGGTGAAGATCCAGAAGCACAACCTGAATCTACAGACGTGGAAAAAACGGGTGGAAAATCAAGCTTGTTGGATCATTCTGGTCAGTCCCAGCATAAAGCCGTTTCCAAGAAGCTTATTTCAAAAAGCTCATCAAAAATTGCTCTGGTTGAAGCTTCTGAGGGAGAAAAATCTGGTTTGAAGACGAAAGTTCTTCCAGTGAAGTTCAAACGCAGCTCCACGGAAAAACCTGTTATTGAACCCACACACAGCTCTGATAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCTGCTAAGATTGGTAGAATCTTTATTCCCAAGAAAGCGAAATTAGATGATATGCAAGCCGAGTCTCGTAAACATTCCATTGCTATACGCCCTCCAGCTGATCCAAGTAGAAGTCAAGTTGATTCTCATAAGCCGTCAATTAAAATTCGACCACCTACAGAAACGGATAGGGAGCAGCCCCAAAAGAAAATTATTATAAAACGCAAGAAGGATGTTATTGATCCGGATCAGTTCAGTCCTAGTGAAAACATGGGATTTGAGCACAGAAAAACGAAAAGAATTGTTGATTTGTCAAATTTTGACAAGCACAGAAAACAGGAGACTATGTATAGATCTGAAGCCGCACTGGCAAAGCAGAAAGCTAAAGAGGATAGAAGATGGTGGGATGAGCAAGAGAAAAGGAGAAAAGAAGAAAGACTCCGAGAAGAACGGGCAAGGAGGCTTCACGAGGAAGAAATGAGGATGCTAAAAGAGCAAGAAAGGTTAGCTGAGTTAAAAAGATACGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAGAAAGCGAAGAAGAAGAAGAAAAAGGCCGCTGAGTTTAGAGACGAGTATATAGATGACCACAGAACAAGATTTAATAACAGGGCGGTAGAAAGAGAACGGAGTGAGAAAAGGAGATCTGTTGTTGAGTTGGGAAGGTATGCAGCCGAATATACTCCGCCACCAAAACGGCGCAGAGGTGGAGGGGGAGAGGTTGGTTTGGCAAATATTTTTGAACGCATTCTTGAGGCGCTCAAAGATCGATATGACCTGTCATATCTTTTCTTGAAACCAGTGTCGAAGAAAGAGGCTCCCGACTACCTGGACATTATCGAGAGACCGATGGATCTTTCAAGAATCAGGGAACGGGTGAGGAATATGGAATACAAAAGCCGGGAAGATTTCAGACACGATGTGTGGCAGATTGCATATAATGCCCACAAATATAACGATGGGAGAAACCCAGGAATTCCTCCTCTTGCTGATCAGCTTTTAGAGCTTTGTGATTATTTGTTGAACGAGAATGATGATAGCCTAACTGAAGCTGAAGCAGGTATTGAAACTAGGGATTTCTAG 5664 0.4216 MAYDSDSPSQDGRDEDDDEEYEDAGQGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDIVEQDYGEKADGAVDYEDIDEEYDGPETEAANEEEHLLPKKDFLSVEASIEALKSRSSVFDDENYDEESEKEQDLVNDTSEVNNISSTEEPVVSLVDASKGEKSEELESHDGSQQSEELDTDLQKLQEEGPEVLKGSTPLPVLCVEDGMVILRFSEIFGIHEPLRKGGRREQRPSIPRDRYKSLNISDTVEEDEEVFFRGSSHSLLLNKEACVVQNGISESSDADLDLSKFGFLRGAASMTVKDGPQQKDSCLSADPMKQNCSGLAWEGNSLLCADFYPLDQQEWEDEIIWGNSPAASNNNHESTEISGSALGPLGCDEGDIESGMQNIQLEPPKELEEKNHSVFLCSSPVSLEPFGSRDSSGAKTNSLSKNLFHPQLLRLESRPEVDISNPADDGRENISEEHNQNGLVKHFTKLTLQNQDMMEGSWLDKIIWDEVNRPIVKPKLIFDLQDDQMHFEILDSKEGRHLRLHAGAMVLTRPLKSSNGDSSELLGHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDITNFHRPRALWYPHDNEMAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDYEETLSSVKAKASKKLDFKPLETVKIFYLGKELEDQKSLAAQNVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSFLRNTNSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVSLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSTGSKNLQTYMMNRLLLHICREFQAAEKRHLPPCIRVDELLSQFPYLSEASFRKKIKEYAILQKGTNGQLILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERLEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKTAAARGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTDDFKRDKADGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEDERKKKKTKFVVEEAGIIPKLQPRFVFDNTDQVKQITNIVQLDGVNILKENTVTNLREEDGISAKKGKSVKVNKTKKTDLSPISVANKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESTDVEKTGGKSSLLDHSGQSQHKAVSKKLISKSSSKIALVEASEGEKSGLKTKVLPVKFKRSSTEKPVIEPTHSSDKPVTSDSETAKSAKIGRIFIPKKAKLDDMQAESRKHSIAIRPPADPSRSQVDSHKPSIKIRPPTETDREQPQKKIIIKRKKDVIDPDQFSPSENMGFEHRKTKRIVDLSNFDKHRKQETMYRSEAALAKQKAKEDRRWWDEQEKRRKEERLREERARRLHEEEMRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKAAEFRDEYIDDHRTRFNNRAVERERSEKRRSVVELGRYAAEYTPPPKRRRGGGGEVGLANIFERILEALKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQIAYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDSLTEAEAGIETRDF 1887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1164 1887 Coils Coil 1269 1289 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 105 124 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1563 1598 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 138 204 - -
Lele53g1164 1887 Pfam Ubiquitin family 671 739 IPR000626 GO:0005515
Lele53g1164 1887 Coils Coil 1661 1719 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 567 613 - -
Lele53g1164 1887 SMART bromo_6 1763 1873 IPR001487 GO:0005515
Lele53g1164 1887 MobiDBLite consensus disorder prediction 470 489 - -
Lele53g1164 1887 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Lele53g1164 1887 Gene3D - 649 739 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1419 1458 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 65 98 - -
Lele53g1164 1887 CDD Ubl_TAFs_like 667 738 - -
Lele53g1164 1887 SUPERFAMILY TAF(II)230 TBP-binding fragment 23 62 IPR036741 -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1208 1227 - -
Lele53g1164 1887 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1886 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Lele53g1164 1887 Pfam Protein of unknown function (DUF3591) 586 1153 IPR022591 -
Lele53g1164 1887 SUPERFAMILY Ubiquitin-like 637 737 IPR029071 -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1 28 - -
Lele53g1164 1887 Pfam Zinc knuckle 1408 1428 IPR041670 -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 182 204 - -
Lele53g1164 1887 ProSitePatterns Bromodomain signature. 1788 1845 IPR018359 -
Lele53g1164 1887 SMART ubq_7 667 739 IPR000626 GO:0005515
Lele53g1164 1887 FunFam Transcription initiation factor TFIID subunit 1 649 739 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1497 1612 - -
Lele53g1164 1887 Gene3D - 21 68 IPR036741 -
Lele53g1164 1887 Pfam Bromodomain 1775 1849 IPR001487 GO:0005515
Lele53g1164 1887 ProSiteProfiles Ubiquitin domain profile. 667 737 IPR000626 GO:0005515
Lele53g1164 1887 MobiDBLite consensus disorder prediction 161 176 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1531 1552 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1643 1665 - -
Lele53g1164 1887 MobiDBLite consensus disorder prediction 1439 1458 - -
Lele53g1164 1887 CDD Bromodomain 1773 1868 - -
Lele53g1164 1887 Gene3D - 1636 1886 IPR036427 GO:0005515
Lele53g1164 1887 SUPERFAMILY Bromodomain 1755 1876 IPR036427 GO:0005515
Lele53g1164 1887 PRINTS Bromodomain signature 1800 1816 IPR001487 GO:0005515
Lele53g1164 1887 PRINTS Bromodomain signature 1786 1799 IPR001487 GO:0005515
Lele53g1164 1887 PRINTS Bromodomain signature 1834 1853 IPR001487 GO:0005515
Lele53g1164 1887 PRINTS Bromodomain signature 1816 1834 IPR001487 GO:0005515
Lele53g1164 1887 MobiDBLite consensus disorder prediction 592 606 - -
Lele53g1164 1887 ProSiteProfiles Bromodomain profile. 1783 1853 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1164 Lele-ChrLele53 20546801 20560149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1164 667 737 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.845 2.67e-08 53.5