Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1133 ATGGGTAAGAAACAGCATGATGCTGCCAGAGTCAGCGAGCCAGTAGCCGAGGAAGCCCCCGACTACTCGGCAATCAAAGCAGAGAAGAAGAAAAATAAGAAGAAAGAAAAGCAAAACGAAGATAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGGATAGCACAGAACCGAAATCGAAGAAGAGTAAGAAGGATAAGAAGTCGAAAAAAGGCGCGGATGAAACCGTAACCGTCGAAACAAATGACTCCGAGAACGGTGGAGAGGACGACTCGGTGAGAGATGGGCACGTTGTGGTTACTGGAAAGAATATCAATGATGAGAATTATGCGCCCACCAAGACTTTCGCCGAATCAGGGCTTCCAAAGGAAGTATTGGAGTGCTGCAAAAGTTTTGAAAAGCCGTCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTATTGAATGGTCGTGATTTAATTGGCATTGCGGCTACTGGTTCAGGAAAAACACTAGCTTTTGGAATACCGGCTATGATGCATGTTATGAGCAAGCGCAAGAATAAAGCGTCAACGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACCAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCTTTAAAATCTGGTGTTGACATTGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTTCTTTGAAAGAGGTTTCATTCGTGGTGCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGGCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTTCATAACTTAGCGCAAGAGTTTATGGATCCTAGCCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTGCACGAGATAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCTCAGAGGAATAGAGTATTGGTTTTTGTCTTATACAAATTGGAAGCCACGCGAGTTGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCTATACATGGGGACAAGGCACAATATGAACGTACGAAGTCACTATCGTTATTCAAGAATGGAATCTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCGGATGTCGAAGTTGTGATCAACTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATCGGGAGGACAGGACGAGCCGGGAAGAAAGGTGTTTCGCATACGTTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGACGATCTCTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTCAAGGAGATTCCTGCTGATGCTCCCATGTCAAAGAAGATAACATTTGACGACTCTGGCGAAGATTAA 1599 0.4478 MGKKQHDAARVSEPVAEEAPDYSAIKAEKKKNKKKEKQNEDSPKRKLEEVEVQDSTEPKSKKSKKDKKSKKGADETVTVETNDSENGGEDDSVRDGHVVVTGKNINDENYAPTKTFAESGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVMSKRKNKASTGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGVDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPSPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKAQYERTKSLSLFKNGICPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDDLLKFGTHVKKKESKLYGAHFKEIPADAPMSKKITFDDSGED 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1133 532 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Lele53g1133 532 CDD SF2_C_DEAD 334 466 - -
Lele53g1133 532 Pfam DEAD/DEAH box helicase 137 306 IPR011545 GO:0003676|GO:0005524
Lele53g1133 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 320 IPR014001 -
Lele53g1133 532 Gene3D - 325 499 IPR027417 -
Lele53g1133 532 MobiDBLite consensus disorder prediction 1 96 - -
Lele53g1133 532 Pfam Helicase conserved C-terminal domain 348 457 IPR001650 -
Lele53g1133 532 SMART helicmild6 376 457 IPR001650 -
Lele53g1133 532 SMART ultradead3 131 337 IPR014001 -
Lele53g1133 532 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 57 492 - -
Lele53g1133 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 470 IPR027417 -
Lele53g1133 532 MobiDBLite consensus disorder prediction 22 78 - -
Lele53g1133 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 140 IPR014014 GO:0003724
Lele53g1133 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 496 IPR001650 -
Lele53g1133 532 FunFam ATP-dependent RNA helicase RhlB 323 500 - -
Lele53g1133 532 Gene3D - 78 324 IPR027417 -
Lele53g1133 532 CDD DEADc 132 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1133 Lele-ChrLele53 20333264 20337486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1133 112 486 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 3.86e-54 186