Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1114 ATGCAAACGTTAAAGATTAGTCCTCCGAACGGGAAGCCCACTTCAGGATGGAGAAACAGTGGCACACATCATCATCATCATCAAGATCAGCTCGATTTGGGGTTCTGGAAGAGAGCTTTGGAAACCAGAAGCCCTTTGCTTTCTTCTTCTTCTTCTTCAATGACTAAAACCCCTAACTTTTTCGACCTTTCACTCTCCAATATTTCTTCTTCTTCCATTAACCCAGCAGCTCCTACTACATTAACAAACCCTTCAATTTCTCCCTCCTCAGATCATATCAGCTGCCAAAACGCCCCGTTTCAGCACCCACAAGACCTGGGATTTCTCAGACCCATCCGAGGAATCCCAGTGTACCAGAACCTTCCTCATCCTCATCCTCATCCAGCTGCAACTACCACTCTTCCTTCTTCTTTCTCTCAAGTTCGTCAGAATCTGCAGGATGCTTCTATTTCAGCCTCAGTGAACAACAACACGACCACCACCCCTTTTCCTTTTCATCATCATCATCATCACCATAGTCAAGGTTTGATGAGGTCGAGGTTCTTGTCCCATCGCTTCCCTACCAAACGCAGCATGAGAGCTCCTAGGATGCGTTGGACTACCACCCTCCATGCTCGCTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCACGAAAGTATATCCTTCTTTTCTTCTTCTTTTACTTTTCATTCCCATCATCAATTTGACTTTCTTCATCTTCTTCTTCTTCTTCTACATATTATTAATCTGGCAATTCCGTTTGGGCTCTTAGGGGCTACACCCAAATCCGTTCTCGAGCTAATGGATGTCAAGGATCTTACTTTAGCCCACGTTAAATCTCATTTACAGATGTATAGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCTTCTACAGGGCAATCAGATGGGTATGATAATGGATCATCTGGGGACACTTCTGAAGAATTAATGTTTGACATGAACAAGCAGGGAAGACAAAGTGTTCATCAAGAAAAGGAATATCATCATGGCCTTTGGAGCAACTCTTCCAGAGAAGCTTGGCTGCACGGGAAGCCAAAGGAGATTGATTCTGTTGGAAACAACAATGTTAGTTCTCTTGAGAAAGAGAGAATATCAGATGGAAGCTCATCGTCAAACATTTCAGGATCAAGCACTAAGAAGCCTAATCTTGATTTGGAGTTCAGTTTGGGGCAGCCAATAATATGA 1209 0.4392 MQTLKISPPNGKPTSGWRNSGTHHHHHQDQLDLGFWKRALETRSPLLSSSSSSMTKTPNFFDLSLSNISSSSINPAAPTTLTNPSISPSSDHISCQNAPFQHPQDLGFLRPIRGIPVYQNLPHPHPHPAATTTLPSSFSQVRQNLQDASISASVNNNTTTTPFPFHHHHHHHSQGLMRSRFLSHRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHESISFFSSSFTFHSHHQFDFLHLLLLLLHIINLAIPFGLLGATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSTGQSDGYDNGSSGDTSEELMFDMNKQGRQSVHQEKEYHHGLWSNSSREAWLHGKPKEIDSVGNNNVSSLEKERISDGSSSSNISGSSTKKPNLDLEFSLGQPII 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1114 402 MobiDBLite consensus disorder prediction 353 402 - -
Lele53g1114 402 Gene3D - 194 290 - -
Lele53g1114 402 Coils Coil 402 402 - -
Lele53g1114 402 MobiDBLite consensus disorder prediction 1 30 - -
Lele53g1114 402 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 4 400 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele53g1114 402 SUPERFAMILY Homeodomain-like 258 287 IPR009057 -
Lele53g1114 402 MobiDBLite consensus disorder prediction 1 18 - -
Lele53g1114 402 MobiDBLite consensus disorder prediction 291 315 - -
Lele53g1114 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 287 IPR006447 GO:0003677
Lele53g1114 402 MobiDBLite consensus disorder prediction 358 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1114 Lele-ChrLele53 20221034 20225506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1114 104 400 G2-like Transcription Factor Family AT4G17695 40.777 5.83e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele53g1114 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1114 53 20221034 20225506 Lele55g0373 55 2324401 2328317 hybridization
Lele53g1114 53 20221034 20225506 Lele56g0362 56 2742732 2746663 hybridization