Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1112 ATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAATGTATTAGAATCTTTGAAGCGTAAAAGGCTTCACCGAGCAAAATCTTCGACTGCCAATAAGACAAGTGTCGCTAATATGATGACAAGAAGCGGAGGAGATGCTTTAAGGGCTTCGTCATCATGTGGTATGAGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGAGTGATCTAGAATGGACTGAAAAAATTCCCGAGTGTCCTGTGTACTCCCCAACAAAGGAGGAATTTGAGGACCCTTTGGTTTATTTGCAAAAGATAAGTCCTGTTGCTTCAAGATATGGTATATGCAAGATTATTTCTCCTTTGAGTGCTTCAGTTCCTGCTGGAGTCGTGTTAATGAAGGAGAAAACAGGGTTTAAGTTTGCAACTAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACGTTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTGTTTGCACGTAGATATTGCAGTGCTGGTTGTCTTCCCGCCTCATTTTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGTGGAAAGATGGAAAGTGTAGAATATGCATGTGATGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAACCTTTCTCGGCTGCCCAGATCCATCTTGCGGCTCCTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTACTTGTACAGTATTAATTATCATCACTGCGGGGCACCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGAACATGTGTATACTAATGACATCCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTACCGGTCTATAAAGCTGTTCAGAAACCAGGAGAGTTTATTGTTACCTTTCCTAGAGCGTATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCCATTGGTGATTGGTTTCCTTTAGGGGCCACTGCCAGCAGGCGATATGCACATCTAAGCAGGGTTCCTCTGCTACCTCACGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTCGAAGATTCAGATTTTCCTTCTGCAGACTCGATGTTCCATCATAGCATCAAGATCTCTTTTGCTAATTTGATGCGCTTCCAGCATTGTGCCTGCTGGGTGTTAATTAAATCAGGGGTGTGCACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAACGTGACTGCTATGTAGCATATGTTGACTGTGACTGTCATATGCATCCTGTGTGTCTTCGCCATGATATCGAATCTCTTGACTTCACCTGTGGGAGGAAACACACTCTTTACTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCAAAGAGGTTTGAGCAGGAAGATGGTATACTGGATGAGATAATTAAGCAGATCAAGGCTGACAATAACATGTATTCATATCCCTTGTCAAAAATGTTTCAGAGAGCTGAGGCCGATGGATATACCCCTCATTCCGAGATAAAATTTGATCATGTTATTGAATCATCTTACCCAGGCTCAGATCAGTTAGTGAATATTCAAGAGTGTGCTATTCAAAGTCAATGGGCTTTGAGGCATTGCTCAGGATCAGAATATCATAAATCCGAAGTGTCTGATGTTTCCTTCATTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCAGACCCTGTTGAGAGTTATGCTCCTACTACTAAAAATGATGAGGGGCGTGCAAACTCAGGCATTGTTAATTCTGAAGGGCTTTGTGAAAGAGTATCCAATAGTGTATGCGAGTCTTTATTATCCCCTACACGGAATCAGGACGGCTCGATTAAACCTCAGGGTGGTGATCTTTATAGATTAAAGCCCATGGTGAATAATGAAAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTTTGAAGGCAGAGAGGAGAAATGGGAATGATGGGATGTGTTCCAAGCATTCTGACCCCCAGGGACTAAAACGGTTGAAGAAAAACTCTGTTGAAGGGAGAAGTGGGCAACTAATAGATTACAGCAAAAGCAGGGAATCAAGTTACAACAAGTGGAGGCACCCAGGAAATCAGAAAATTGATAGCGAAAGCTGTACGAGGGAAAGATATGCGAAGGTTAATAATGGCATTCCCATTTCCATAAGGTACAAGAAAGTAGGAAACGAGGACCAGAGTGGAGAAGGAGATCACAACAAGAGAAATTGGTTGCAACAGAGTATAATGGAACCATCATCTGCCACAGAGATAGGGATTGGAGCGAAGAGGCTTAAAGTGCGAGGCCCTTCATTCCTGAGCTTATAG 2577 0.4241 MVEGRVCLPKEARNVLESLKRKRLHRAKSSTANKTSVANMMTRSGGDALRASSSCGMRLHGNADAFSKRKVDKFDMSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKISPVASRYGICKIISPLSASVPAGVVLMKEKTGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKMESVEYACDVDGSAFSSSPNDQLGSSKWNLKNLSRLPRSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALEFERVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGATASRRYAHLSRVPLLPHEELLCKEAMLLYTSLELEDSDFPSADSMFHHSIKISFANLMRFQHCACWVLIKSGVCTNVSSHSHGSILCSLCKRDCYVAYVDCDCHMHPVCLRHDIESLDFTCGRKHTLYLREDIEDMEAAAKRFEQEDGILDEIIKQIKADNNMYSYPLSKMFQRAEADGYTPHSEIKFDHVIESSYPGSDQLVNIQECAIQSQWALRHCSGSEYHKSEVSDVSFISAASALCSLSDPVESYAPTTKNDEGRANSGIVNSEGLCERVSNSVCESLLSPTRNQDGSIKPQGGDLYRLKPMVNNESDDSDSEIFRVKRPSSLKAERRNGNDGMCSKHSDPQGLKRLKKNSVEGRSGQLIDYSKSRESSYNKWRHPGNQKIDSESCTRERYAKVNNGIPISIRYKKVGNEDQSGEGDHNKRNWLQQSIMEPSSATEIGIGAKRLKVRGPSFLSL 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1112 858 Gene3D Cupin 88 446 - -
Lele53g1112 858 SMART cupin_9 235 405 IPR003347 -
Lele53g1112 858 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Lele53g1112 858 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Lele53g1112 858 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Lele53g1112 858 Pfam jmjN domain 89 121 IPR003349 -
Lele53g1112 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 764 - -
Lele53g1112 858 FunFam Lysine-specific demethylase isoform A 83 432 - -
Lele53g1112 858 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Lele53g1112 858 Coils Coil 856 858 - -
Lele53g1112 858 SMART JmjN_1 87 128 IPR003349 -
Lele53g1112 858 MobiDBLite consensus disorder prediction 706 756 - -
Lele53g1112 858 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Lele53g1112 858 MobiDBLite consensus disorder prediction 684 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1112 Lele-ChrLele53 20202034 20207624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1112 85 555 JUMONJI Transcription Factor Family AT2G34880 32.058 4.60e-67 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele53g1112 JmjC 1.8e-39 CL0029