Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1103 ATGGACGGAGTTAATAACAGCAGCTCCCGCGGCGGCACGCCGGCGCCGGCTCCAGCTCCCATTCCTAATACCAACGCACCTCCGCCGTTTCTTAGTAAGACATATGACATGGTGGATGACCCATCCAGTGATGCAATCGTTTCTTGGAGCTCAACCAACAATAGCTTTGTGGTCTGGAACCCGCCCGAGTTTGCCAGGGACCTTTTGCCTAAGTACTTTAAGCACAATAACTTCTCCAGCTTTGTTAGGCAGTTGAATACATATCAACTAGATCGATCAGAAGAGGGAAATTTCACAAAGAAAGCAATTCTCAGAGTGTTGGCCCTCGATTATGACCTATTTATTTCCAAAGAGACATGGAACTTAAAGGTTGTAACTCGTAATGCTGGTCTAGATCCTTTGTGGCGTTTGTTTGTGGCATTGTACGTTTGGCTGTCATTGAGTTTAAGCTTTGTGGCTGGGAGATGTGGTTGTTCTGCAATCTGCTTGGCCATGAGACTTGTTGATGACAATCAGAAACATAAACTTTTCAAGATTTTCATTTTGAGATTAGATCCAACATAA 564 0.445 MDGVNNSSSRGGTPAPAPAPIPNTNAPPPFLSKTYDMVDDPSSDAIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYQLDRSEEGNFTKKAILRVLALDYDLFISKETWNLKVVTRNAGLDPLWRLFVALYVWLSLSLSFVAGRCGCSAICLAMRLVDDNQKHKLFKIFILRLDPT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1103 187 SMART hsfneu3 26 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g1103 187 Pfam HSF-type DNA-binding 30 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g1103 187 FunFam Heat stress transcription factor B-4 22 106 - -
Lele53g1103 187 Gene3D - 23 128 IPR036388 -
Lele53g1103 187 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 90 IPR027725 -
Lele53g1103 187 SUPERFAMILY "Winged helix" DNA-binding domain 28 92 IPR036390 -
Lele53g1103 187 MobiDBLite consensus disorder prediction 1 34 - -
Lele53g1103 187 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g1103 187 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g1103 187 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1103 Lele-ChrLele53 20155595 20158384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1103 2 88 HSF AT1G32330 72.414 1.59e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele53g1103 HSF_DNA-bind 4.6e-24 CL0123