Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1100 ATGGGTAGGCCACCGTGTTGTGAGGAGACTGGTGTGAAGAAAGGACCATGGACGCCTGAAGAAGATGAGAAGCTTATCGCTTATATCAGTAAACGTGGCAGTGGAAGTTGGAGAACAGTTCCAAAGCACGCAGGCCTCAACAGATGCGGTAAAAGTTGCAGGCTACGGTGGACCAATTATCTTAAGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAACCTTCATTCTGTTCTTGGCAACAAGTGGTCGAAGATTGCAACGCATCTTCCGGGGAGAACTGATAATGAGATTAAGAATTTCTGGAACACCAGTATAAGGAAGAAGCTTCTGCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAATTGACTTGAAGCATCTCTTGAATCTCTCGCTTTTGCTTGGCGTGCCTCATAATAATAACTTGATGAGCCATGCTGGTCTGCAGGGTTTACTGCAACCAGATTTGAGTCATCAGTTAGCTCAAATCCAACTTCTACAGAATCTGTTGCAGCTTCTGAATGCCAATTCATCGTTGCAGAGTAATTTCCCACTCTTGGGAAATTACAGTTTGATCAATAACCCAATAATGGAAGCAGGTATAAATGGTGCAAACAGTGCTCTCCTCAGCAACTTGAGAGAGCAAGAATTATATGCGAACCCTGCTCTATTTCCTTCGGCACCAAGTGAATCACGCCAGGATGTTTCAGAATCATGGACAGACCAAGAAGGAGCATCATCAGATCAACAAGCTTTGGGCATTAATAATAGTATTAGCAGCACTTCATCACAAGAAAAGAATATTCAAGCTGAAAATCCATTTCCTGCAACCAGTTCAGGCAACTTCAACCAGCAGTCACCTCCATCCACAGTCTTTGATCCTTGGGAAAAACTCTTGCAAGATGATGGTGCAAATATTTTTAAAAGTTTGGTTTGTGTTGCAAGATCTCTTCATTCCTCTGGAAAAAGTTGTTATAATATTCGTCTGTTGACCCAGAATAATATAATGGTTAAAGAAATTCGACAAGAAACTCAGGATGATCGGAGGGCAACCTTTTGGCCACCGTGTTTTTGTGACGAGAGTGGTGCCGTAAAGAGAGGAACATGGACACCTGAAGAAGATGGCAAGCTTTCTGATTTGACCGCCATTTCCCAATTGCCGATTTCATGCATGGTAGAGGATTTTAAGGCCCAGATGATCAAGGAATATACACACTCACAAAGATACGATGAAGCATTGATTCTTCATTCATTCATTCATTACTTAGAGTTCCTCTCCTTGTATTCTTCGGAAAATGCTTATCTTCAAATTCAAACAAAAATTGTGATTTGTGTTGCAAAAATTGATCTCTCCAATTTATTCTCTTCAAAAGTGAATACAATCAAAGCTCGAGCTGAATTGAGAGGTCAAGACCAAACTGAGATTCCATGCAATAAATACATTAAGGAGCAGTTAGAGATAGCTGCATTATTGAGAATTAATAATGAAAAGCAACCATTGATCATACCAAGGAATTTGATCGAGGATATGGCATACAACAAGAAAATGACAAAGCCACCGTGTTCTGAGGAAACTGGTGTAAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTTTTAAGTATATCAGCAAACATGGAAGTGGAAATTGGAAAGCAGTTCCAAAGCATGCCGGCCTCAATAGATGCGGCAAAAGTTGCAGGCTAAGGTGGTCAAAGATTGCAACGCATCTTCCAGGGAGGACTGACAATGAGATTAAGAACTTCTGGAACACAAATTTAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAAACTCACAAGCCAAGAACTGACTTGAAACATCTCTTGAATCTTTTGCAGTTGCTAGGAATGCCTAATAATAATAACTTGATGAGCCCTTGGAACCATGAGGGTCTTCAGGGGTTGCAGCAACCAGATTTGACTCATCACGTAGCCCAAATCCAACTTCTGCAGAAAGTGTTGCAGCTTATGAATGGCAATTCCTCGTTGGTCAGTAACATGCAGAGTAATTTCCCACTCTTGGGCAATCACAGTTTGATCAATAACCCAATAATGGGAGCAGATACAAATGGTCTGAACAATGCTCTCCTCAACAACTTGAGAGAGCAAGAATTATATGAAAGCCCTGCTCTATTTCCTTCGGTACCAAGTGAATCACGCCAGGATGTTTCAGAATCATGGGCAGACCAAGAAGGAGTATCATCAGATCAAGAAGTTTCGGGTATTAATAATAGTATCAGCGGAACAACATCACATGACATAAGTCAAGAAGAAAACCTAGTTCCTACGTTTGATTCAACCACGTCCTTCAATCAAATGGAGATTAGCCCTATTACAGATGAAGTGCCAACCCAGTCAACTTCATCCACGATCTATGATACTATTTGGGAGAAGCTCTTGGAAGATGACGATGATACAAGCGATTCCTTTTGGAAAGAACTCTTAAAGTAA 2505 0.4128 MGRPPCCEETGVKKGPWTPEEDEKLIAYISKRGSGSWRTVPKHAGLNRCGKSCRLRWTNYLKPDIKRGKFTEEEEKLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTSIRKKLLQMGIDPETHKPRIDLKHLLNLSLLLGVPHNNNLMSHAGLQGLLQPDLSHQLAQIQLLQNLLQLLNANSSLQSNFPLLGNYSLINNPIMEAGINGANSALLSNLREQELYANPALFPSAPSESRQDVSESWTDQEGASSDQQALGINNSISSTSSQEKNIQAENPFPATSSGNFNQQSPPSTVFDPWEKLLQDDGANIFKSLVCVARSLHSSGKSCYNIRLLTQNNIMVKEIRQETQDDRRATFWPPCFCDESGAVKRGTWTPEEDGKLSDLTAISQLPISCMVEDFKAQMIKEYTHSQRYDEALILHSFIHYLEFLSLYSSENAYLQIQTKIVICVAKIDLSNLFSSKVNTIKARAELRGQDQTEIPCNKYIKEQLEIAALLRINNEKQPLIIPRNLIEDMAYNKKMTKPPCSEETGVKKGPWTPEEDEKLFKYISKHGSGNWKAVPKHAGLNRCGKSCRLRWSKIATHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDLKHLLNLLQLLGMPNNNNLMSPWNHEGLQGLQQPDLTHHVAQIQLLQKVLQLMNGNSSLVSNMQSNFPLLGNHSLINNPIMGADTNGLNNALLNNLREQELYESPALFPSVPSESRQDVSESWADQEGVSSDQEVSGINNSISGTTSHDISQEENLVPTFDSTTSFNQMEISPITDEVPTQSTSSTIYDTIWEKLLEDDDDTSDSFWKELLK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1100 834 CDD SANT 69 110 IPR001005 -
Lele53g1100 834 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele53g1100 834 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele53g1100 834 Pfam Myb-like DNA-binding domain 537 581 IPR001005 -
Lele53g1100 834 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele53g1100 834 ProSiteProfiles Myb-like domain profile. 532 584 IPR001005 -
Lele53g1100 834 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 588 IPR017930 -
Lele53g1100 834 SUPERFAMILY Homeodomain-like 537 604 IPR009057 -
Lele53g1100 834 MobiDBLite consensus disorder prediction 232 302 - -
Lele53g1100 834 SMART sant 13 63 IPR001005 -
Lele53g1100 834 SMART sant 66 114 IPR001005 -
Lele53g1100 834 SMART sant 536 605 IPR001005 -
Lele53g1100 834 FunFam Transcription factor MYB39 69 130 - -
Lele53g1100 834 FunFam MYB-related transcription factor 13 66 - -
Lele53g1100 834 Gene3D - 536 580 - -
Lele53g1100 834 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele53g1100 834 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele53g1100 834 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele53g1100 834 CDD SANT 539 603 IPR001005 -
Lele53g1100 834 MobiDBLite consensus disorder prediction 730 776 - -
Lele53g1100 834 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Lele53g1100 834 Gene3D - 69 116 - -
Lele53g1100 834 Gene3D - 581 607 - -
Lele53g1100 834 MobiDBLite consensus disorder prediction 234 299 - -
Lele53g1100 834 Gene3D - 12 67 - -
Lele53g1100 834 FunFam MYB-related transcription factor 536 584 - -
Lele53g1100 834 PANTHER F14D16.11-RELATED 1 312 - -
Lele53g1100 834 MobiDBLite consensus disorder prediction 732 776 - -
Lele53g1100 834 CDD SANT 16 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1100 Lele-ChrLele53 20119691 20129513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1100 524 834 MYB Transcription Factor Family AT5G16770 36.490 3.90e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele53g1100 Myb_DNA-binding 7.6e-16 CL0123