Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1096 ATGGCTTCCCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGCTTCTGTAGTCTCTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAACAAAATTCAAGCCCTAATTTTTCACCTCTGGTTATTGCAGTCATTGGAGTTTTGGCCAGTGCTCTTCTTCTTGTAATCTACTATACCATAATCTCCAGATACTGTGGCAACCCAGAATCGTCAGATACACAGAATCATCACGACCCTTCAAATGATGAATTGGAACTCTTTCATGATCCTTCACTTCACGAGCCAGGGCACTCGTCACCCAGTGGTTTAGACGAGGCTCTGATAAAGTCCATCACGGTTTGTAAGTACAAGAAAGAAGATGGGTTTGTGACGGTAGCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGACGATGAAAGCATCAGGCTTTTACCTAAGTGTAGCCATGCTTTTCACATGCCTTGTATTGACACGTGGCTCAAATCACACTCCTCTTGTCCTCTCTGTCGTGCTAGTATCTTCACCTTCAACGCTTCAGCTCTTCTGATGGTGTCTGATAATTCCACGATAGAGAATTCGACTTTCCAGGAAAATCAGCCGGGGAATGAGAACAATGAAGTGGTCAGTTTAGCAGTGGGAGAAGAAAGTGAAGAAACCATACAACGTGTTACAACTCCGAAGCCTAGTACATTGCGTGCTATGAGCGATTTGGGGAATTTGCAGGGAAGGCATCATAGTGTGATTGAGATTAAAGATGAAGGGTACGTTAAGCCCTTAAGAAGGTCAATTTCTATGGACCATTCATTCCAAAGTGGGAACAGAGTAAAAGAAGAAGAAGAAGAAGAAGGCTCTGTAAATGAAGCAGGTCCATCAAAGAGATGTGGACGAGAAAGCAGCAAATCTAACAACAGAAGAAAGGTATTGCAGTGCGTGTCGAGTCCGATTGTAATGAAGAGATCGTTTTCAAGTGGAAGAGTCTCTATCAGCCGAGGAAAACAAGGGATAATCCCTATCTGA 1065 0.4357 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEQNSSPNFSPLVIAVIGVLASALLLVIYYTIISRYCGNPESSDTQNHHDPSNDELELFHDPSLHEPGHSSPSGLDEALIKSITVCKYKKEDGFVTVADCSVCLSEFKDDESIRLLPKCSHAFHMPCIDTWLKSHSSCPLCRASIFTFNASALLMVSDNSTIENSTFQENQPGNENNEVVSLAVGEESEETIQRVTTPKPSTLRAMSDLGNLQGRHHSVIEIKDEGYVKPLRRSISMDHSFQSGNRVKEEEEEEGSVNEAGPSKRCGRESSKSNNRRKVLQCVSSPIVMKRSFSSGRVSISRGKQGIIPI 354
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1096 354 MobiDBLite consensus disorder prediction 287 319 - -
Lele53g1096 354 MobiDBLite consensus disorder prediction 282 322 - -
Lele53g1096 354 Pfam Ring finger domain 143 186 IPR001841 -
Lele53g1096 354 CDD RING-H2_PA-TM-RING 143 186 - -
Lele53g1096 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Lele53g1096 354 SUPERFAMILY RING/U-box 131 192 - -
Lele53g1096 354 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Lele53g1096 354 PANTHER RING-H2 FINGER PROTEIN ATL16 41 322 IPR044600 GO:0016567|GO:0016740
Lele53g1096 354 FunFam RING-H2 finger protein ATL54 119 192 - -
Lele53g1096 354 SMART ring_2 144 185 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele53g1096 Lele-ChrLele53 20095166 20096230 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1096 1 252 C3H Transcription Factor Family AT3G03550 45.926 3.16e-69 219