Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1086 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGACGCTTTCCTAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCATCTGCTTCTACGACTACTACCACTGGAACTGACCCCACCAAAGCTTTCTCTCAAAACCAGCTCTCGGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCACGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATTTTCTGGCAATCTTCTTGTGATTACTCGGGAGCCTCCGTGTTGGGTTGGGGTGATGGCTACTACAAAGGCGAGGAGGTTAAAGGAAAGGGGAAGGCCAAAATGACGGCGTCTTCCGCGGCGGAGCAGGCGCACCGGAAGAAGATTCTTCGCGAGCTTAATTCGCTAATCTCCGGGTCGTCCTCCTCCCCAGATGACGCCGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCAGGGCAGGCTTTCCTCAATTCGAGCCCTGTTTGGGTAACCGGTTCCGAGCGGTTGGCTGCTTCAACATGCGAGAGGGCGAGGCAGGGTCAGGTGTTCGGGCTTCAGACTCTGGTTTGTATACCGTCGGCGAGTGGGGTGGTCGAACTAGGCTCCACGGAGCTGATATTTCAAAACTCTGATCTGATGAATATGGTTAGGGATTTGTTCAATTTCAATAGCGCCGAAGCGAGTTCTTTGTGGCTGTCAAATGCTTCAACTGCGGCAGATCAGGGCGAGCACGACCCTTCTTCGCTCTGGCTCAACGATCCTTCAGCAATTGAAATTAGGGATTCGGTCACTACTGTTGCGCCCAATTCAGTGCCGAGCTCTACCAACAGCCATACCAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACGACTTTAGCTGAGACCCCAAGTTCCATTCATATCCCAAACGCTCACCATAGCCACCAACAGCAACGGCAACAGCAGCGCCATTCGCTGAGCCAGGGATTCTTTTCACGGGAATTGAACTTTTCGGACTATGGATTGGACGGAAACGGTGTGAAAAACGGAAATTCGCATTCCCTGAAGCCGGAATCGGGTGAGATTTTGAATTTCGGGGAGAGCAAGAAAAAAGCTTGTAATGGAAATGGGAATGTCCTTTCAGGTCAATCTAAGTTCAATCATGAGGAGAAGAAGAGGAGGTCGCCCACGTCTAGGGGCAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTGGTTTTGCCCTCTTCAAATATGAAGACCGGTGGTGGCGGCGGCGATTCCGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGACAGTAAAGTGGCCGAACCAGAGAAAAAACCTCGGAAGAGAGGGCGAAAGCCCGCTAATGGAAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTTAATCAACGGTTCTATGCGCTTCGTGCAGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTACATATCTGAGCTCAAGTCGAAGCTTCAGACAATGGAATCAGACAAGAACGAATTGCAGGAGCAATTGGATTCTGTGAAGAAGGAACTGGAGGTAGCCCACAAAGGTGCAGCGCCACCTCCGCCGCAGAAAGAACCAAAGCAGTCCAATCGTCAAGCTAGCAAGATCACTGATTTGGATATCGACGTGAAGATTATAGGTTGGGATGCGATGATTCGGATCCAATGCAGCAGGAAGAACCATCCAGCAGCGAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGATGTGAACCACGCGAGCGTGTCGGTGATGAATGATTTGATGATCCAACAAGCAACGGTGAGGATGGGGAGTCAATTCTACACGCAGGAGCAACTCCGTTTAGCACTTTCGTCCAAAGTTGGCGATGTCCGATAG 1998 0.504 MNLWTDDNSSVMDAFLGSDLSSLWPPQQSSASTTTTTGTDPTKAFSQNQLSVCIFNQETLQQRLHALIEKASESWTYAIFWQSSCDYSGASVLGWGDGYYKGEEVKGKGKAKMTASSAAEQAHRKKILRELNSLISGSSSSPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVTGSERLAASTCERARQGQVFGLQTLVCIPSASGVVELGSTELIFQNSDLMNMVRDLFNFNSAEASSLWLSNASTAADQGEHDPSSLWLNDPSAIEIRDSVTTVAPNSVPSSTNSHTNNPKPMQLDTRGSTTLAETPSSIHIPNAHHSHQQQRQQQRHSLSQGFFSRELNFSDYGLDGNGVKNGNSHSLKPESGEILNFGESKKKACNGNGNVLSGQSKFNHEEKKRRSPTSRGSNDEGMLSFTSGVVLPSSNMKTGGGGGDSDHSDLEASVIKEVDSKVAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQTMESDKNELQEQLDSVKKELEVAHKGAAPPPPQKEPKQSNRQASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDVR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1086 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Lele53g1086 665 MobiDBLite consensus disorder prediction 559 580 - -
Lele53g1086 665 CDD bHLH_AtAIB_like 479 555 - -
Lele53g1086 665 FunFam Transcription factor bHLH13 475 549 - -
Lele53g1086 665 Coils Coil 528 562 - -
Lele53g1086 665 MobiDBLite consensus disorder prediction 402 416 - -
Lele53g1086 665 SMART finulus 488 537 IPR011598 GO:0046983
Lele53g1086 665 MobiDBLite consensus disorder prediction 417 442 - -
Lele53g1086 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Lele53g1086 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 485 552 IPR036638 GO:0046983
Lele53g1086 665 MobiDBLite consensus disorder prediction 390 492 - -
Lele53g1086 665 MobiDBLite consensus disorder prediction 450 492 - -
Lele53g1086 665 MobiDBLite consensus disorder prediction 286 343 - -
Lele53g1086 665 PANTHER MYC 46 660 IPR045084 GO:0003700|GO:0006355
Lele53g1086 665 Gene3D - 474 562 IPR036638 GO:0046983
Lele53g1086 665 Pfam Helix-loop-helix DNA-binding domain 486 531 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1086 Lele-ChrLele53 20020930 20022927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1086 1 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.192 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g1086 bHLH-MYC_N 3.4e-54 CL0161