Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1075 ATGAATGGGGTGAGGCAGGGAAGATTATGTGAGCTCGTGAACGGAAAACTGACGTCCACAGAAGTCAATAGGGAACCAAATTTACCATGCATTGATATAATATTTGGTATAGAGGTACTTAAAAGGCTAAAGTTCATAATTGCAAACGTGAATGATGATGTTTGGATAGAGAGGGAGAGGGCCCTAAGCTTTCTCTCTCGTTCTGCTTTTCCCTTCAATGCCTTTGCTTTGCATTTACCTGCGAAAAAGTTTCTGAAGAATAATCGGGGGGTTTCTTCTCTGCTGATCTACCAAGACTTCGTTTGTGTGTATAGTTGGAGCTTGATGTCTCCACCAGTTCTGACTGCTCAGGAGGAAGGGCAGAGCAACACCTCAACAATAACTTCTTCACGATCATCAGATCGTATCTCTCAAAATGTGACTGGATTAAAAGAACGCAATTACCTAGGATTATCAGATTGTTCATCAGTGGACAGCTCTACTGTTCCAAGCGACTCAGATGAGAAAAAGGACAATCTGAATTTGAAGGCTACAGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGGATGATAGCTCAACAAAACTTGATGAGAAGCCGCTGTTTCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTACGGGCAACAAAAGGGGATTTTCCGACACCATGGATGGGTTCACTGAGGGGAAGTTTCCTGGGAATTCGGGGGTAAATGTGCTGCTGTCTCCTAGATCTGCCAGAGCTCAGCCAACTATGACAAAAGAAATGCCGACTAAGGTGGTGCAAGAACGGCCATGTGCAACTAACGGAGCAGGCCACAACAAAACGGATGCTTCTATTGGTGGCAGTGCTCCTGCCTCTAAGACACAGGTTGTCGGTTGGCCTCCAATAAGATCATTTAGGAAGAACTCATTGGCTGTCACTTCAAAGAACAATGATGAAGTAGATGCAAAACCGAGTCCTGCCTCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTTAGGAGTTACAACACATACCAGGATCTGTCTTCCGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCAGGGGACTCCAGGAAGAGAAATGTGGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGCAGGAGCTAG 1365 0.4505 MNGVRQGRLCELVNGKLTSTEVNREPNLPCIDIIFGIEVLKRLKFIIANVNDDVWIERERALSFLSRSAFPFNAFALHLPAKKFLKNNRGVSSLLIYQDFVCVYSWSLMSPPVLTAQEEGQSNTSTITSSRSSDRISQNVTGLKERNYLGLSDCSSVDSSTVPSDSDEKKDNLNLKATELRLGLPGSQSPERDDSSTKLDEKPLFPLLPTKDGICSLSQKTVVTGNKRGFSDTMDGFTEGKFPGNSGVNVLLSPRSARAQPTMTKEMPTKVVQERPCATNGAGHNKTDASIGGSAPASKTQVVGWPPIRSFRKNSLAVTSKNNDEVDAKPSPASLFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFTLGQCGSQGTPGREMWSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1075 454 MobiDBLite consensus disorder prediction 277 300 - -
Lele53g1075 454 FunFam Auxin-responsive protein 329 446 - -
Lele53g1075 454 MobiDBLite consensus disorder prediction 117 138 - -
Lele53g1075 454 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 173 441 IPR003311 GO:0005634|GO:0006355
Lele53g1075 454 MobiDBLite consensus disorder prediction 180 205 - -
Lele53g1075 454 SUPERFAMILY CAD & PB1 domains 331 435 - -
Lele53g1075 454 MobiDBLite consensus disorder prediction 283 297 - -
Lele53g1075 454 MobiDBLite consensus disorder prediction 154 173 - -
Lele53g1075 454 Gene3D - 330 447 - -
Lele53g1075 454 Pfam AUX/IAA family 178 445 IPR033389 -
Lele53g1075 454 ProSiteProfiles PB1 domain profile. 334 438 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1075 Lele-ChrLele53 19967652 19974701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1075 338 444 B3 DNA Binding Superfamily AT4G23980 30.841 4.44e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele53g1075 AUX_IAA 2e-89 CL0072