Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1052 ATGAAGAAGTTGGGTGAGATAAGGAAACGGGTTATCTTATTGTGGTGGTTAGGAATGAGTTTGCAGTTACTCTTCTTGTTGCAGCTGGGTGCTTGTTTCTCATACGACGAGACCTCATTCAGTCGAAGAGAGTTGAGGGGAATAAACACTTCAAAACCCAGACCTTCTATTTCTGCAGTGAAGCTGAATACAGAAGATCATGGTCAAGTGGTGATTGAGAATGGCATTGTTCAAGTCAGTCTGTCCAGCCCCGAGGGGTATATTCTTAGCATATCATATGACGGAATCGACAATGTCCTACAATCTCGTAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCAGTGGACGATGACCAAGTGGAGATTTCATTTGTAAGAACATGGACACCTTCCATGGAAGGCGAAAATGTCCCCATGAACATAGACCAAAGGTACATATTGCGAAGAGGCGATTCGGGGTTTTACTCGTACACAATATTTGAACGCCCAGAAGGATTTCCAGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTGGAGGGAGAAAGGTTCGTGTATATGGCTATATCAGACAATAGGCAAAGGTACATGCCAAGCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCTGTTCTATTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAATATAGACAACAGAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATTACACCCACTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTAACCTCTCACGTGGGCCCATTTGCCCTCTCCATGTTTGTGAGCACCCACTATGCCGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGAGTTATAAGAAGGTTTTCGGCCCTATTTTTATGTATCTTAACTCTGTTTCAAGCTCTGAGAATTCACTCACACTCTGGGCAGATGCTGAACAACAGATGTCAAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCTCAATCACAAGCTTACAATCCACCCACTCAACGTGGAAGCGTTGTTGGAAGATTACTGGTTCAAGATTGGTACATCAGAGGAGGCAGATTTCTTTATGCTGACTCTGCATATGTTGGTCTTGCTCTTCCTGGTGCGGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTTTGGACCCAAGCAAACAAGAAGGGCTATTTTGTCATAAACAACGTTGTTCCGGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATCACCATCACACCAGGATGTGTAATCAAATTGGATTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAGTACCAGATCGGTCCGCTGCAGAATTCTATATCCCAGACCCTTACCCCACACTCATGAACAAATTATACAATGAACAACCCAAAGACAAGTTTAGACAATATGGATTATGGGAACATTATGCTGATTTATATCCAAACAGTGATCTTGTCTACACTGTTGGTGTCAGTTCATATGATCAAGATTGGTTTTATGCTCATGTTACAAGGAGCACTGGAAACAAGACATACCAGGCAACGACATGGCAGATTAGATTTAATCTTCAAAATGATCCATTCAAAGGAAATTACACCCTGCAACTAGCCTTAGCAGCAGCCTCTAACTCTGAACTAAAGATTTGGATGAATGGGCAAGGTAATGTTCCTGCTTTGTTTGAAACTGGGAAAATTGGAGGAGACAGTGCCATACCAAGGCATGGAATCCATGGACTGTACTGGTTGTACAGCATTGAAGTTCCAAGCGATGTTTTAGTGAAAGGGAATAATACAATCTATTTACAACAGTCATTGGCCATTAGTCCTTTTCAAGGAGTTATGTATGACTATATTCGTTTAGAAAGACCGCCAACTCTAACGACTTGA 2082 0.426 MKKLGEIRKRVILLWWLGMSLQLLFLLQLGACFSYDETSFSRRELRGINTSKPRPSISAVKLNTEDHGQVVIENGIVQVSLSSPEGYILSISYDGIDNVLQSRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSVDDDQVEISFVRTWTPSMEGENVPMNIDQRYILRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLEGERFVYMAISDNRQRYMPSMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENIDNRVHGWISVDAEAPVGFWVITPTNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGESYKKVFGPIFMYLNSVSSSENSLTLWADAEQQMSKEVKSWPYDFPQSQAYNPPTQRGSVVGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGDYNLFAWVPGFIGDYRYNATITITPGCVIKLDSLVYNPPRSGSTVWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDKFRQYGLWEHYADLYPNSDLVYTVGVSSYDQDWFYAHVTRSTGNKTYQATTWQIRFNLQNDPFKGNYTLQLALAAASNSELKIWMNGQGNVPALFETGKIGGDSAIPRHGIHGLYWLYSIEVPSDVLVKGNNTIYLQQSLAISPFQGVMYDYIRLERPPTLTT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1052 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 689 - -
Lele53g1052 693 SUPERFAMILY Starch-binding domain-like 383 484 IPR013784 GO:0030246
Lele53g1052 693 CDD RGL4_M 386 486 IPR029413 -
Lele53g1052 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
Lele53g1052 693 CDD RGL4_C 498 686 - -
Lele53g1052 693 Gene3D - 383 484 - -
Lele53g1052 693 Gene3D - 62 362 IPR014718 GO:0030246
Lele53g1052 693 Gene3D - 493 686 - -
Lele53g1052 693 SUPERFAMILY Galactose mutarotase-like 64 350 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele53g1052 693 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Lele53g1052 693 SUPERFAMILY Galactose-binding domain-like 493 686 IPR008979 -
Lele53g1052 693 Pfam Polysaccharide lyase family 4, domain III 496 685 IPR029411 -
Lele53g1052 693 Pfam Rhamnogalacturonate lyase family 59 253 IPR010325 -
Lele53g1052 693 CDD RGL4_N 63 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1052 Lele-ChrLele53 19823618 19828507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1052 57 688 Polysaccharide Lyase AT1G09890 55.660 0.0 733
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1052 53 19823618 19828507 Lele55g0428 55 2660893 2665593 hybridization
Lele53g1052 53 19823618 19828507 Lele56g0405 56 3056107 3060466 hybridization