Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1051 ATGGAGTCGCTATCTTGGATTTTGCAGCTTTTCTTTCTGCAATGTGGTTGTTCTGACAAGAAGATCTTAGAAAGAATATCATGGGAAAGTGGTGATGGACAATGTCATAGTCCAAGTCACTCTGTTAAGACCCGAGGGGAATGTCGTGGGAATATCATTAATGGAATCGACAATGTACTAGAATCTCGTAATGATGACCAAGACAGAGGGAATTTTGATGTGGATTGGAAGAAACCAGGAGAAAATAATAATAATCATCCTCATCATCAGAGGATCATAGCAAAGAGAAACCAAGGTATAGAATTCCTTGTTATGAAGGATTATTTGAAACTAAGGTTATTAATTATGAACTCCAATTTCATGGCATATCTTATATGGGGTTATCAGTTCTGGACTCAAGCTGACAAGCAGGGCCACTTCGCGATAAAGAATGTTATACCAGGAAAGTATAATTTGTTAGCGTGGGTTCCAGGCTTTATTGGTGATTATAAATATAATACAACAATCACCATCACGCCAGGGTGTTGGATCAAATTGGGTTTTCTGGTATATAGTCCTCCGAGAAATGGTCTTACCGTTTGGAAATTGGCGTCCCAGATCGATCAGCAGCAGAATTCCATATCCCGGACGTTTAGACAATATGCATTGTGGGCACGTCATGCTGAATTGTATCCAAAAAATGATCTAATTTACACTGTTGGTGTTCACTCTCATCAAAAGGATTGGTTCTTTGCCCATGTTACATGGAACATAGGAGATAACAGTTATCAACCAAGTAAATGGCAGATTAAATTTGAACTCCTAAGACGCGATCTATTAGTAGGAACTTACACTTTACGAGTGGCTTTAGCATCAGCTACTAATTCTAAATTACAGGTTTGGGTCAATGAGCAAGACAAGAAGCGTCCCCCATTTGAAAGTGGAATGTTAAGAGGAGACAATGCCATAGCAAGGCATGGGATCCATGGATTATACTGGCTATTCAGCATTGATGTTCCAAGTCATCGTTTAGTACAAGGGAACAATACTGTCTATTTAAAACAGCCACTTGCCATTAATCCTTTCCAAGGATTTATGTAG 1080 0.3907 MESLSWILQLFFLQCGCSDKKILERISWESGDGQCHSPSHSVKTRGECRGNIINGIDNVLESRNDDQDRGNFDVDWKKPGENNNNHPHHQRIIAKRNQGIEFLVMKDYLKLRLLIMNSNFMAYLIWGYQFWTQADKQGHFAIKNVIPGKYNLLAWVPGFIGDYKYNTTITITPGCWIKLGFLVYSPPRNGLTVWKLASQIDQQQNSISRTFRQYALWARHAELYPKNDLIYTVGVHSHQKDWFFAHVTWNIGDNSYQPSKWQIKFELLRRDLLVGTYTLRVALASATNSKLQVWVNEQDKKRPPFESGMLRGDNAIARHGIHGLYWLFSIDVPSHRLVQGNNTVYLKQPLAINPFQGFM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1051 359 Pfam Polysaccharide lyase family 4, domain III 214 359 IPR029411 -
Lele53g1051 359 SUPERFAMILY Galactose-binding domain-like 206 359 IPR008979 -
Lele53g1051 359 Gene3D - 115 175 - -
Lele53g1051 359 Gene3D - 201 352 - -
Lele53g1051 359 CDD RGL4_M 127 180 IPR029413 -
Lele53g1051 359 CDD RGL4_C 221 359 - -
Lele53g1051 359 Pfam Polysaccharide lyase family 4, domain II 127 178 IPR029413 -
Lele53g1051 359 SUPERFAMILY Starch-binding domain-like 124 182 IPR013784 GO:0030246
Lele53g1051 359 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 127 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1051 Lele-ChrLele53 19813343 19821254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1051 102 359 Polysaccharide Lyase AT1G09890 46.154 7.16e-78 249