Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1050 ATGTTCGGATACCAAAGTCCCTTACGTAAGATTGAAGACTCCCATCAACCTGCTGTCACGCTGCAACAAAGTGATGACAAGGTGGTGATGTATAATGGGATCGTCAGCGTTACGGCGTCAAGGCCAGACGGCAATTTGTTGGGATTATCATATAATGGGATTGATAATCTTCTTGAACCTCGTAATCGTCTTTATGATAGAGGGTATTGGGACTTCTCTTGGAACCCACAAGGTTACCCCAGTAAATATCACAGATTCAAAGGGACAACGTTTTCTGTTATAATGGATACCGAAGATCAGGTTGAAGTTTCTTTCTTATACCCATGGAATTCTTCCTCGCCCGCAGGAACCATCCCAATGAATGTAGATATAAGGTATATTTTGCGTAGAGGCAGCTCAGGATTATATTCATACGCCATATTGGAGCATTCAGAAAATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAGCTCAACCAATACCTGTTCCACTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCGACTGCTGATGATAGATCCAAGGGCCAGACCCTTGATTATCGTGAAGCTGTCCTCTTAACCCATCCTAGCAACCCTCAATTCTTAGGGGAGGTGGATGATAAATACATGTACTCGGTTGAGAACAAAGACAACAAAGTTAGCGGATGGGTCTCTTTTAACACTACCAATTCTTCTTCAGTTGGCTTCTGGATGATTACACCCTCCAACGAGTTCCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCATCCTCAACTCTTTCTTGAGCCCGCACTATGCTGGGAAGGACATATCTATGACATTCAAAGAAGGAGAAACCTATAAGAAGGTATTCGGACCCACTTTTCTGTACCTCAACACTGTTCCAAACCCCCATGATCCTCAAACTCTCTGGCAGGATGCTAAAAACCAGTTGCAAAAGGAAGTTGAAAACTGGCCCTATGATTTCCCTCAATCAAAGGATTTCTTTCCATCCAATCAGCGTGGAAAAGTGTCAGGACAATTAATATTCAAATGGTACGCGACAAGCGCTAACTCTAATAATGCTTACGTTGGTCTAGCCCTCCCAGGCGATGAAGGATCATGGCAAGCAGAAAGCAAGGGTTATCAATTTTGGAGCCAAGCTGATAATAGCGGCTTCTTCACTATACAAAATGTTGTGCCTGGGGACTACAACTTGTATGCTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGAGTTAGTCATTACCATCAAACCAGGAGATGCCATCCAATTAGGTGAACTAAATTACTGGCCTCTAAGAAATGGTCCTACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCGCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCGTTAACAACTTATACTTAGGAAAGACCAAAGACAAGTTTAGACAATACGGTTTGTGGAAACGTTACGCTGAATTATATCCCACTAGTGACCTCGTTTACCTTGTCGGTGTTAGTGATTATTCCAAAGATTGGTTCTACGCTCAAGTCCCCAGGGACCTAGGAAATGGCACATACATTGCAACAACATGGGAGATAAGATTTGAACTGCCATTTGTCATTACAGGAAGTTACACCCTACGTATTGCCTTAGCATCAGCCACTAATGCTCACTTATTTGTTTGGGTGAATAAAGGCGAGGATCGTCACCAGCGGTTCAACACAGGAATAAGAGGGGAGGACAATGCGGTAGCAAGGCATGGCATACATGGATTGTATTGGAAGTACAGCTTCCAAGTACCAAGCTATCTACTTGTGAAAGGAACCAACTCCATTCACCTCTCACAACCCAAAGCTAAATCTCCTTTTGAAGGAATTATGTATGATTATATCCATGAGCACTCTGTGGTTCGCATTCCAGAGAGCATGCCTCTTGATGCTGCGGCTCCTCTCCTCTGTGCTGGCATCACTGTGTATAGTCCTTTGATGCATTTTGGCCTAGACAAGCCTGGTCTCCATGTTGGTGTGGTTGGTCTCGGTGGTTTAGGCCATATGGTTGTGAAATTTGCCAAGGCCTTTGGTGCTAAGGTGACTGCAATGAGTACATCTCCTGAGAAGAAGGAGGAAGCCATAACAAATCTTGGAGCTGACTCCTTTGTGGTCAGCCGGGAGCAAGATCAGATGCAGACGTACTGCGCTCTCTTCGTCATTTTTTGCCCAGTCTCTCCGTTCTCACATTTCGTTTCTTTGCGACTGAATTCCGTCAATTCAATTCAAATGGCTTCACAACCAGAGACTGAGCATCCCAGGAAGGCTTTCGGATGGGCTGCAAGGGATACGTCTGGGGTTCTCTCTCCCTTCAACTTCTCTAGAAGGGAAACTGGAGAGAAAGATGTGACGTTCAAAGTGTTGTACTGCGGGATTTGCCACTCGGACCTCCACATGATCAAGAATGGTTGGGGCAATTCTATCTATCCACTAGTACCCGGGCATGAAATTGTTGGTGAAGTAACAGAGGTAGGAAGCAAGGTTGAAAAGTTCAAAGTTGGAGACAAGGTAGGTGTGGGATGCATGGTTGGTTCATGCGGCTCATGCCAAAGCTGCGCTGAAAATCTGGAAAATTACTGCCCAAAAATGATTCTGACATATGGTGCCATGTATGTGGATGGTACCATCACATATGGAGGTTACTCTGACTTGATGGTTGCTGATGAGCACTTTGTGGTCCTCATTCCAGACGGCCTCCCTCTTGATGCAGCTGCTCCTCTCCTCTGTGCTGGCATCACTGTGTATAGTCCTTTGAGGCATTTTGGACTAGACAAGACTGGTCTCCATGTTGGTGTGGTTGGTCTTGGTGGTTTGGGCCATATGGCTGTGAAGTTTGCCAAGGCCTTTGGTGCTAAGGTGACCGTAATAAGTACATCACCTAATAAGAAGGAGGAAGCAATAAAAAATCTAGGAGCTGACTCGTTTGTGGTCAGCCGGGAGCAAGATCAGATGCAGGCTGTAATGGGTACCCTCGATGGTATCATTGACACTGTCTCTGCTGTCCATCCTCTCTTGCCTTTGATAGGTCTGTTGAAATCCCATGGGAAACTTGTTATGGTGGGTGCCCCAGAGAAGCCTCTAGAGCTCCCAGTCTTTCCTTTACTTTTGGGGAGGAAGTTGGTAGCAGGGAGTTGCTTTGGAGGGATGAAGGAGACACAAGAAATGATTGATTTTGCTGCGAAGCACAATGTGAAACCTGAGGTTGAGGTTGTTCAGATTGACTATGCGAACAGGGCAATGGAGCGTCTTGGGAAAGCAGATGTGAAGTATCGATTTGTCATCGACATTGGGAACACACTGAAACCAAGCTCATAA 3384 0.4536 MFGYQSPLRKIEDSHQPAVTLQQSDDKVVMYNGIVSVTASRPDGNLLGLSYNGIDNLLEPRNRLYDRGYWDFSWNPQGYPSKYHRFKGTTFSVIMDTEDQVEVSFLYPWNSSSPAGTIPMNVDIRYILRRGSSGLYSYAILEHSENFPAIRVDVFRLAYKLNQYLFHYMAITDERQREMPTADDRSKGQTLDYREAVLLTHPSNPQFLGEVDDKYMYSVENKDNKVSGWVSFNTTNSSSVGFWMITPSNEFRNGGPTKQSLTCHVGPVILNSFLSPHYAGKDISMTFKEGETYKKVFGPTFLYLNTVPNPHDPQTLWQDAKNQLQKEVENWPYDFPQSKDFFPSNQRGKVSGQLIFKWYATSANSNNAYVGLALPGDEGSWQAESKGYQFWSQADNSGFFTIQNVVPGDYNLYAWVPGILGDYKYELVITIKPGDAIQLGELNYWPLRNGPTVWEIGIPDRSAQEFYVPDPYPNLVNNLYLGKTKDKFRQYGLWKRYAELYPTSDLVYLVGVSDYSKDWFYAQVPRDLGNGTYIATTWEIRFELPFVITGSYTLRIALASATNAHLFVWVNKGEDRHQRFNTGIRGEDNAVARHGIHGLYWKYSFQVPSYLLVKGTNSIHLSQPKAKSPFEGIMYDYIHEHSVVRIPESMPLDAAAPLLCAGITVYSPLMHFGLDKPGLHVGVVGLGGLGHMVVKFAKAFGAKVTAMSTSPEKKEEAITNLGADSFVVSREQDQMQTYCALFVIFCPVSPFSHFVSLRLNSVNSIQMASQPETEHPRKAFGWAARDTSGVLSPFNFSRRETGEKDVTFKVLYCGICHSDLHMIKNGWGNSIYPLVPGHEIVGEVTEVGSKVEKFKVGDKVGVGCMVGSCGSCQSCAENLENYCPKMILTYGAMYVDGTITYGGYSDLMVADEHFVVLIPDGLPLDAAAPLLCAGITVYSPLRHFGLDKTGLHVGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKEEAIKNLGADSFVVSREQDQMQAVMGTLDGIIDTVSAVHPLLPLIGLLKSHGKLVMVGAPEKPLELPVFPLLLGRKLVAGSCFGGMKETQEMIDFAAKHNVKPEVEVVQIDYANRAMERLGKADVKYRFVIDIGNTLKPSS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1050 1127 Pfam Alcohol dehydrogenase GroES-like domain 804 916 IPR013154 -
Lele53g1050 1127 Pfam Rhamnogalacturonate lyase family 13 211 IPR010325 -
Lele53g1050 1127 Gene3D - 450 639 - -
Lele53g1050 1127 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 922 1088 IPR036291 -
Lele53g1050 1127 FunFam Cinnamyl alcohol dehydrogenase 933 1089 - -
Lele53g1050 1127 CDD RGL4_M 346 442 IPR029413 -
Lele53g1050 1127 Gene3D - 18 321 IPR014718 GO:0030246
Lele53g1050 1127 SUPERFAMILY GroES-like 786 950 IPR011032 -
Lele53g1050 1127 SMART PKS_ER_names_mod 789 1117 IPR020843 GO:0016491
Lele53g1050 1127 FunFam Cinnamyl alcohol dehydrogenase 661 780 - -
Lele53g1050 1127 Gene3D - 342 438 - -
Lele53g1050 1127 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 650 738 IPR036291 -
Lele53g1050 1127 Pfam Polysaccharide lyase family 4, domain II 366 438 IPR029413 -
Lele53g1050 1127 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 22 639 - -
Lele53g1050 1127 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 677 723 IPR006140 GO:0051287
Lele53g1050 1127 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 837 851 IPR002328 GO:0008270|GO:0016491
Lele53g1050 1127 Gene3D - 786 1119 - -
Lele53g1050 1127 SUPERFAMILY Galactose mutarotase-like 20 311 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele53g1050 1127 Gene3D - 933 1089 - -
Lele53g1050 1127 Pfam Polysaccharide lyase family 4, domain III 452 638 IPR029411 -
Lele53g1050 1127 CDD RGL4_N 24 312 - -
Lele53g1050 1127 Gene3D - 661 785 - -
Lele53g1050 1127 FunFam Putative cinnamyl alcohol dehydrogenase 6 1090 1119 - -
Lele53g1050 1127 FunFam Uncharacterized protein 782 932 - -
Lele53g1050 1127 SUPERFAMILY Starch-binding domain-like 342 439 IPR013784 GO:0030246
Lele53g1050 1127 SUPERFAMILY Galactose-binding domain-like 449 638 IPR008979 -
Lele53g1050 1127 CDD CAD1 780 1118 - -
Lele53g1050 1127 CDD RGL4_C 454 638 - -
Lele53g1050 1127 Pfam Zinc-binding dehydrogenase 960 1083 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1050 Lele-ChrLele53 19800569 19810180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1050 19 639 Polysaccharide Lyase AT1G09890 53.025 0.0 660
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1050 53 19800569 19810180 Lele55g0429 55 2668907 2680141 hybridization
Lele53g1050 53 19800569 19810180 Lele56g0407 56 3067434 3071565 hybridization