Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1040 ATGGAAGTGTTGAGGTCGAGCAACTCGCAGTACCTTCAATACGACGCCGCTTCTGCTGCTCCTCCTCACTACTTGGTCGATAACTTCTATACCAATGGATGGGGAAACCCCAAGCCCCAGGTGCTGTACACAGACGTAGCGCTTAACGAGAATAAAGAAAGTCAAGGTGCAGGGAACATAGTGGAATCGTCATTTGGTTGTCCAGGTTTCATGGAGACCCAGAATCAGGAGCAGCCAGTGCCAAAACTGGAGGATTTTCTGGGAGATTCTTCGTCTTCTATTATGCGTTACTCTGATAGCCAAACGGATACTCAAGATTCGTCGACCCTGACTCATATATACGACCAGGGCTCGGCTTACTTCAGCGACCAGCAAGATCTGAAAGCCATCGCAGAGTACCAAGCTTTCTCAACCAACTCGGGCTCCGAAGTGGATGACTCGGCCTCCATCGTCAAAACTCAACCCGCCGGTGGCGAGTTCGCGGCTCACTCGATTGAGTCGTCCGGGAATGAGCTGGCCTTCTCAAGTGGCATCACCACGGGAACTCTGTCCCTCGGTGTCACCACCACCCCACAATGTGGCGCCGACCAGAAAACCATCATTCCGGTGGATTCCGATAGCTCCAAGAAGATGGTCGATACTTTCGGTCAAAGAACTTCGATTTACAGAGGAGTCACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGGAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGGTGGATATGACAAAGAAGACAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCGCCGCCACCACCAACCTTCCAATATTCTGTTTTGATTATGATAGCTACCCAAGTTTCCAATTATGCAAAGGAAATGGAGGAGATGAAGCATGTAACGAAGCAAGAATTTATCGCCTCACTGCGAAGACAGTTAAAATTGCCGTTTTACGTTCATGCAGGAAAAGTAGCGGATTTTCCAGGGGAGCTTCTATATACAGGGGCGTCACAAGGCATCACCAACAAGGTAGGTGGCAAGCTAGAATTGGCCGGGTTGCAGGGAACAAGGATCTGTACCTTGGAACATTTGCCACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAATGCTGTGACCAACTTTGAGATGAGTAGATATGACGTTGAAGCCATCATGAAGAGTTCTCTTCCGATCGGTGGGGTGGCAAAACGCTTGAAGCTTTCGCTCGAATCCGAGCAGAAAGTGACTCTGAACAATAATAGCCAGCAAATCCAATGCACCAACATGAGTAACAGCATCAACTTCTCACCAATTCAGGCAGTTTCTTCCTCTGTCCCTTGTGCAATTCCATTTCATCCCGCTGCAACTGCATACTATCACCACAACCTCTTGAGCCATTTTCGTCCCTCCAACGCGGCCGAATCTGCCGTATCTAACCCTTCCGTGACTCCATATCCTACTACTCTGCCGACACCTTCTGAGTTCTTTATATGGCCTCCTCCACATCATCAGTCATATTGA 1572 0.493 MEVLRSSNSQYLQYDAASAAPPHYLVDNFYTNGWGNPKPQVLYTDVALNENKESQGAGNIVESSFGCPGFMETQNQEQPVPKLEDFLGDSSSSIMRYSDSQTDTQDSSTLTHIYDQGSAYFSDQQDLKAIAEYQAFSTNSGSEVDDSASIVKTQPAGGEFAAHSIESSGNELAFSSGITTGTLSLGVTTTPQCGADQKTIIPVDSDSSKKMVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPAATTNLPIFCFDYDSYPSFQLCKGNGGDEACNEARIYRLTAKTVKIAVLRSCRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMKSSLPIGGVAKRLKLSLESEQKVTLNNNSQQIQCTNMSNSINFSPIQAVSSSVPCAIPFHPAATAYYHHNLLSHFRPSNAAESAVSNPSVTPYPTTLPTPSEFFIWPPPHHQSY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1040 523 SUPERFAMILY DNA-binding domain 340 401 IPR016177 GO:0003677
Lele53g1040 523 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700|GO:0006355
Lele53g1040 523 Gene3D AP2/ERF domain 221 286 IPR036955 GO:0003700|GO:0006355
Lele53g1040 523 CDD AP2 220 285 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 FunFam AP2-like ethylene-responsive transcription factor 340 401 - -
Lele53g1040 523 ProSiteProfiles AP2/ERF domain profile. 221 284 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 439 - -
Lele53g1040 523 SUPERFAMILY DNA-binding domain 220 285 IPR016177 GO:0003677
Lele53g1040 523 Pfam AP2 domain 341 391 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 Pfam AP2 domain 221 276 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 CDD AP2 340 401 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 FunFam AP2-like ethylene-responsive transcription factor ANT 220 286 - -
Lele53g1040 523 SMART rav1_2 221 295 IPR001471 GO:0003700|GO:0006355
Lele53g1040 523 SMART rav1_2 341 405 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1040 Lele-ChrLele53 19753798 19757751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1040 31 523 AP2-EREBP Transcription Factor Family AT5G10510 51.489 2.44e-147 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele53g1040 AP2 1.2e-08 CL0081