Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1031 ATGACTCTTCCCGGTTCTCTGCGGCTGTCCCATGATTTCGGATATTCCAGGAACCAGGGCTGCTGTAACCAACATATGGTACTGACGATAATGTACAGAACCAAGTTACATTTATCAAGTGCAGATCGATTATATCATGTTTCGTTCCTGAAGCAGGATTGCTGGAGAAGTCAACTCTTTTGCAATATCAATAGGCCAATACATACCTTATTTTGCAAATCCCATGCTTTTAAGTGCCATTCTTTTCTAGGACCAGGCCCACCGAGTGAGCTGCCTATTTCTAAGGTGGCAGCTACAGCACTGGCAAGGTCATATAATCTATTACAAAGTAGTCCTGTCACATTGAAGTTGATTCCAGCCATTGGCATTATCATTTTTGCTGTGTGGAGTGTTGGCCCGTTAATGTATCACACAAGAAAACTGCTTCTCCAGAGGAGCGACAATAGTTGGAAGAAAAGTAGAACGCATTATGTAGTAACTTCTTACATTCAGCCATTACTGTTATGGACTGGCGCTATGCTTATTTGCAGAGCCTTGGACCCATTACATTTACATTCAGAAGCAGCTCAAGCTGTCAAGGAGCGGCTTTTGAGTTTTGTACGATCATTGTCAACTGTAGTTGCCTTTGCCTATTGTTTATCATGTGCGATTCAACAAGCACAGAAATTCTACACGGAGAGTGCTGCTGATACCTGTGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTCTTTATTCTGCAGTATGGATTGCTGCCTTCTCTTTGTTCATGGAGTTGCTGGGCTTTTCTACTCAGAGGTGGGTTACCGCAGGAGGTCTTGGGACTGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCAATAATTCATGCAACTCGGCCTTTTGTGGTGAATGAATGGATTCAAACAAAGGTTGAAGGATATGAAGTTTCTGGTACTGTGGAGCATGTTGGCTGGTGGTCACCGACAATTATACGCGGCGAAAATCGTGAAGCTCTTTACATTCCGAACCACAAGTTCACAATGAACGTTGTGCGAAACCTCAGTCAGAAAACACATTGGCGCTTCAAGACCCACCTGGCTATTAGCCATATGGATGTTAATAAGATAAATAACATTATTGCTGACATGAGAAAAGTCTTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGGCTGCACAGGAGAGTGTTCCTGGAGAATATAGATCCTGAAAATCAGGCTCTTTTGATATTGGTGTCCTGTTTTGTCAAGACCTCACACCACGAAGAATTTTTGTGCGTTAAAGAGGCTTTACTACTGGATCTTCTTAGGGTTATTGGCCATCACCGAGCTCGACTTGCAACACCAGTTCGTGCACTGCAGAAAATTTACACTGATGCTGACTTAGAGAACATACCATATTTGGATTCCGTATTTAGTGGTACTGGAACAGTACCAAATAATCCAATAATAATAGAACCACCTTACAAGATCAAAGCAGATGATACTACAAAAACTAACAAGACAGCGACGCAAACCAAGGTTGCACCAACGGTATCAGATTCTAAGGTTAGAGAAACTCGTTCTGACTCCAAGGCAGATGTTGAAGCTGTGATATCTAATTCTGATGCAAATGGAGACTTTAAGGTTGCCGTTGCATCATCCAAACCCAATCCTGAAGTGGGTGAACATGAGCCAATGAAAATGGAGTCAAAAAGTATGTCTGCTTCTGACTCCAAAGTTAGTGAAGCTGGTGTAAATAATAACATGACCGTGAAGAATTCTGATGTCGTACAATCTAAGAATGATGTCAAAGGAGGTGGACGTCCTAAGAATATGCCCACAAAACAAAAAGATGAGAGGAAACAAGCTGGACAACCTCAAATGTCTAGGCCGGTCCTTGAAGAGAATATAGTACTTGGCGTAGCATTGGAGGGATCAAAAAGAACTCTTCCTATCGGCGAGGAAATGGATTCATCTTCTGCTCGAGAGGCAAAAGAAATGGCTGCCCAGGGTAGAAATAGATCCCTAACAGCTGAGAATGGGGAAGATAAGTAA 2061 0.425 MTLPGSLRLSHDFGYSRNQGCCNQHMVLTIMYRTKLHLSSADRLYHVSFLKQDCWRSQLFCNINRPIHTLFCKSHAFKCHSFLGPGPPSELPISKVAATALARSYNLLQSSPVTLKLIPAIGIIIFAVWSVGPLMYHTRKLLLQRSDNSWKKSRTHYVVTSYIQPLLLWTGAMLICRALDPLHLHSEAAQAVKERLLSFVRSLSTVVAFAYCLSCAIQQAQKFYTESAADTCETRNMGFQFAGKALYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLLTLAGREIFTNFLSSAIIHATRPFVVNEWIQTKVEGYEVSGTVEHVGWWSPTIIRGENREALYIPNHKFTMNVVRNLSQKTHWRFKTHLAISHMDVNKINNIIADMRKVLAKNPQVEQQRLHRRVFLENIDPENQALLILVSCFVKTSHHEEFLCVKEALLLDLLRVIGHHRARLATPVRALQKIYTDADLENIPYLDSVFSGTGTVPNNPIIIEPPYKIKADDTTKTNKTATQTKVAPTVSDSKVRETRSDSKADVEAVISNSDANGDFKVAVASSKPNPEVGEHEPMKMESKSMSASDSKVSEAGVNNNMTVKNSDVVQSKNDVKGGGRPKNMPTKQKDERKQAGQPQMSRPVLEENIVLGVALEGSKRTLPIGEEMDSSSAREAKEMAAQGRNRSLTAENGEDK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1031 686 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Lele53g1031 686 Pfam Mechanosensitive ion channel 244 448 IPR006685 GO:0016020|GO:0055085
Lele53g1031 686 Gene3D - 303 358 IPR023408 -
Lele53g1031 686 Gene3D - 199 301 - -
Lele53g1031 686 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 673 IPR045042 -
Lele53g1031 686 MobiDBLite consensus disorder prediction 551 686 - -
Lele53g1031 686 MobiDBLite consensus disorder prediction 573 602 - -
Lele53g1031 686 MobiDBLite consensus disorder prediction 504 530 - -
Lele53g1031 686 MobiDBLite consensus disorder prediction 506 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1031 Lele-ChrLele53 19704374 19708369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1031 9 681 Mechanosensitive Ion Channel Family AT5G10490 54.891 0.0 699