Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1028 ATGGCCAGGGAGAAAATTCAGATTAAGAAGATCGCCAACGCCACGGCGAGGCAGGTGACATTCTCGAAGCGACGCAGAGGACTCTTCAAGAAAGCTGAGGAGCTGGCAGTTCTTTGCGATGCAGATGTTGCTCTTGTGATCTTCTCCTCTACCGGCAAGCTCTTTCAATACTCTAGTTCAAGCACAAAGGAATTACTAGAGAGGCGTCATTTGCACTCAAAACACCTATCGAAGCTGGACCAACCGTCTCTTGAGTTGCAGCTAGTTGAGGACAGCAACTACTTGAGTTTGAGCAAGGAGATCACCGAGAAAAGCCGTCAACTTAGGCGGATGAGAGGAGAGGATCTTCAAGGTTTGAATATTGAAGAATTACATCAACTTGAGACGTCTCTCGAAGCTGGGTTGAGCCGTGTAATTGAGTCGAGGTCACAGATGATGATGGATGAGATCAGTGATCTCGAAAGAAAGGGAATGCAATTGATGGAAGAGAACGAGCGTTTAAGACGTCAAGTGACAGAAATGCCAAGTGGGGCCTGCGGTGCTGAGGAAGGTCAGTCATCTGAGTCGGTCGGTAACGTTTGCAGCTTCACTGGGCATCCTCAAGACTATGATGTCAACTCAGACACGTCCCTCAGATTGGGGTGTGTCAGCAACACGATAGCATCTAAGTATGATGTTATAGTGCTCGGAACCGGACTCAAAGAATGCATCCTCAGTGGCCTCCTCTCTGTTGATGGACTCAAAGTACTGCATATGGATAGAAATGACTATTATGGAGGAGAATCCACATCACTCAATCTTAAACAGCTTTGGAAGCGATTCAGGGGCAATGACAATCCTCCAGAGACTTTAGGCTCAAGCAAAGACTACAATGTTGATATGATCCCAAAGTTCATGATGGCCAATGGAGCTTTGGTTCGTGTTCTCATCCATACTAGTGTTACAAAATATCTGAATTTCAAGGCTGTAGATGGCAGCTACGTGTACAATAAAAAGAAGATTCATAAAGTACCAGCAAATGATGTGGAGGCTTTAAAATCTCCCCTTATGGGATTGTTTGAGAAGCGACGTGCTCGAAAGTTTTTCATTTATGTACAAGACTTCGACGAAAATGATCCGAAATCTAAAGAAGGACTGGACCTTAACACAGTTACAGCAAAAGACCTCATTTCGAAATACGGGCTAGATGACAACACAATTGACTTCATTGGCCATGCTTTGGCGCTCTATTTGGACGATGCTTACTTGAACCAGCCCGCAATAGACTTTGTGAAAAGAATGAAGCTATATGCAGAGTCTTTAGCACGATTTCAGGGCGGATCCCCTTATATATATCCACTTTATGGTCTGGGAGAGCTTCCTCAGGGATTTGCCCGTTTGAGTGCAGTTTATGGCGGCACCTACATGCTCAACAAACCAGAATGCAAGGTTGAGTTTGATGAAAGTGGAAAGGTTGTAGGTGTGACCTCAGAAGGAGAAACAGCTAAATGCAAGAAAGTTGTTTGTGATCCTTCATACTTACCTGACAAGGTGAAGAAGGTAGGGAAAGTGGCCCGTGCTATATGCATTATGAGCCATCCGATCCCAAATACTAGTGAATCTTCGTCAGTACAGGTTATTCTGCCTCAGAAACAGCTTGACCGTAAATCCGATATGTACCTGTTCTGCTGCTCCTACTCTCACAATGTAGCTCCAAAAGGAAAATACATTGCTTTTGTTACCACAGAAGCAGAGACCGACAATCCTGAAGTGGAATTGAAGCCGGGCATAGATCTTCTTGGACCCACGGATGAAATATTTTTTGACACTTACGATAGATATGAACCAGCCAACCAAAGTGCTGACGACCACTGCTTCATATCCACAAGCTATGACGCAACGACCCATTTCGAAACCACGGTGAGAGATGTGATTGCCATGTACAGCAAGATAACTGGAAAGGAGTTGGACCTGTCTGTTGATCTGAGTGCTGCGAGTGCTGCCGAAGAATAA 1992 0.4493 MAREKIQIKKIANATARQVTFSKRRRGLFKKAEELAVLCDADVALVIFSSTGKLFQYSSSSTKELLERRHLHSKHLSKLDQPSLELQLVEDSNYLSLSKEITEKSRQLRRMRGEDLQGLNIEELHQLETSLEAGLSRVIESRSQMMMDEISDLERKGMQLMEENERLRRQVTEMPSGACGAEEGQSSESVGNVCSFTGHPQDYDVNSDTSLRLGCVSNTIASKYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLKQLWKRFRGNDNPPETLGSSKDYNVDMIPKFMMANGALVRVLIHTSVTKYLNFKAVDGSYVYNKKKIHKVPANDVEALKSPLMGLFEKRRARKFFIYVQDFDENDPKSKEGLDLNTVTAKDLISKYGLDDNTIDFIGHALALYLDDAYLNQPAIDFVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDESGKVVGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVARAICIMSHPIPNTSESSSVQVILPQKQLDRKSDMYLFCCSYSHNVAPKGKYIAFVTTEAETDNPEVELKPGIDLLGPTDEIFFDTYDRYEPANQSADDHCFISTSYDATTHFETTVRDVIAMYSKITGKELDLSVDLSAASAAEE 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1028 663 SUPERFAMILY FAD/NAD(P)-binding domain 609 652 IPR036188 -
Lele53g1028 663 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 225 243 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 288 305 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 431 448 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 305 321 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 354 369 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 243 260 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 PRINTS Rab GDI/REP protein family signature 449 470 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 443 515 - -
Lele53g1028 663 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 337 442 - -
Lele53g1028 663 SUPERFAMILY FAD/NAD(P)-binding domain 222 574 IPR036188 -
Lele53g1028 663 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 Coils Coil 150 170 - -
Lele53g1028 663 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele53g1028 663 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lele53g1028 663 FunFam Transcription factor, MADS-box 13 83 - -
Lele53g1028 663 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele53g1028 663 PANTHER RAB GDP-DISSOCIATION INHIBITOR 222 657 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 Pfam GDP dissociation inhibitor 222 652 IPR018203 GO:0005092|GO:0007264
Lele53g1028 663 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Lele53g1028 663 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 276 606 - -
Lele53g1028 663 Gene3D - 223 649 IPR036188 -
Lele53g1028 663 PRINTS Rab GDI protein signature 235 247 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 294 307 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 344 359 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 567 585 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 621 641 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 499 513 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 600 619 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 542 558 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS Rab GDI protein signature 401 415 IPR000806 GO:0005093|GO:0015031
Lele53g1028 663 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele53g1028 663 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 337 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1028 Lele-ChrLele53 19681662 19691649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1028 1 214 MADS-box Gene Family AT2G22540 63.136 2.04e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele53g1028 GDI 1.8e-225 CL0063