LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0999	ATGACCACCACAACCATGGCTTCCTTTAATATCCTTCCTTCTCTAACCCATCTCTCTCTTCTGGCTACTTTATTTGTTACAGTTATTTCCTTTCAAACTTCCATCAAAGCATCTTATATGGTCCCTTTTAAATGCTCTGCAAAAATCAACACGTGTAATGCATCCCTTTACCACATAAACCATGGTCATGACATAGAAGACATAGCCTCTATTTACTCTGTTAATTCGTCCCAAATCCGACCAATAACTCGGGACACCAACCAAGACTACCTCGTAACTGTTCCTTGTTCTTGTCAAATCGTCACTAACTTTAGGGGATATTTCTTTGACACAACACACACAGTGGAGCCAAATGAGACATATATGAATATTTCAAACTTCTTTTACAGTGGACAAGCCTGGTCTCCTACTGATAATAATCTGACCCCAGGGGAAAACTTAACAATACATCTTCCATGTGGATGTTCAGAAAGTGATTCTCAAATCGTTGTGACATATACAGTTCAGCAGAATGATACAACAGCAGAAATCGCTAATCTGCTTTCATCTACACTTGCTGGCATTCAGAACATGAATGAAGTTTTAGCTAATAGGCCTTCATTTATCGATGTCAGTTGGGTGTTATATGTTCCTATGGAGCTCAATGGGATCCCATCTTCAAAAGGAAGTGGAAAGAAACGAAAGCTTTCTATTATCATTGGGGTCTTAGTGGGCGTGGCATTACTTTCTGTTATCACAATAACTATTCTCATTCTGAGGAGGAAAAGAGCCACTGAAACCAGCAAAGAAGATACAACAGCCGTATCGAAAAGATCAACTTCAAAAGCATTCTCTAAAAGATCGATTTCCAATAGAACTATTTCCTTAAAGAACCATCAATTTCATATAGAAACTATAGAAGAAGTAACATCAATTGACTCAGAAAGACCAGTAACATTCTATCTTGAGGAGATTGAGGAGGCCATAAACAAAGAAAGTAAAATAATAGGAAAGGGTGGATATGCGACTGTGTATTTTGGAATTTTAGGAGAAAAGGAGGTTGCTATAAAAGAGATGAGGTCTAATAAATCCAAAGAGTTCTATGCAGAATTAAAAGTCTTATGCAGGATACATCATATCAACATTGTGGAGCTATTGGGATATGCCAGTGGAGAAGACAACCTCTATTTGGTGTACGAGTATGTTTCAAAAGGATCTCTCAGCGACCATCTTCATGATCCATTTCTAAAAGGTCATGAGCCCCTTTCATGGACTGCTAGAGCACAGATTGCTCTGGATGCTGCAAAGGGTCTTGAATACATACATGATTACACGAAAGCACGGCATGTGCACCGGGATATCAAGACGAGCAATATTCTTCTCGACAATAAACTCAGAGCCAAGATTGCAGATTTTGGATTAGTAAAGCTGTTAGAACGAACAAATGATGATGATTTTATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCCGTGAAGGAGCTTCAGGTTACCTCGAAAACCGACATTTTTGCATTCGGAGTAGTTCTAGCAGAGCTAGTAACAGGGAAACCTGCTCTATTTCGTGACAGCCAAGAAACCCCCAGAATGAAATCACTTATTTCTGTCATTAATAAAGCATTTGAAGCTGATGACCCAGAGTGTGCTTTAGAGGATATCATAGACAAAAACCTTCGCGATAGCTATCCCGTGGACGATGTCTTCAAGATGATAGAAATAGCAGAAAGATGCTTACGTGAAGAACCAGTAGAGAGGCCAGAAATGAGGGAGATTGTGGTGATATTGTCACAGGTTTTGATGTCATCCACAGAGTGGGAAGCATCACTAGGTGGAAACAGTGAAGTCTTCAGCGGCATATTTACTGGAAGATGA	1884	0.3976	MTTTTMASFNILPSLTHLSLLATLFVTVISFQTSIKASYMVPFKCSAKINTCNASLYHINHGHDIEDIASIYSVNSSQIRPITRDTNQDYLVTVPCSCQIVTNFRGYFFDTTHTVEPNETYMNISNFFYSGQAWSPTDNNLTPGENLTIHLPCGCSESDSQIVVTYTVQQNDTTAEIANLLSSTLAGIQNMNEVLANRPSFIDVSWVLYVPMELNGIPSSKGSGKKRKLSIIIGVLVGVALLSVITITILILRRKRATETSKEDTTAVSKRSTSKAFSKRSISNRTISLKNHQFHIETIEEVTSIDSERPVTFYLEEIEEAINKESKIIGKGGYATVYFGILGEKEVAIKEMRSNKSKEFYAELKVLCRIHHINIVELLGYASGEDNLYLVYEYVSKGSLSDHLHDPFLKGHEPLSWTARAQIALDAAKGLEYIHDYTKARHVHRDIKTSNILLDNKLRAKIADFGLVKLLERTNDDDFIATRLVGTPGYLPPESVKELQVTSKTDIFAFGVVLAELVTGKPALFRDSQETPRMKSLISVINKAFEADDPECALEDIIDKNLRDSYPVDDVFKMIEIAERCLREEPVERPEMREIVVILSQVLMSSTEWEASLGGNSEVFSGIFTGR	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0999	627	SUPERFAMILY	Protein kinase-like (PK-like)	312	599	IPR011009	-
	Lele53g0999	627	ProSitePatterns	Protein kinases ATP-binding region signature.	329	350	IPR017441	GO:0005524
	Lele53g0999	627	ProSiteProfiles	Protein kinase domain profile.	323	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele53g0999	627	FunFam	PTI1-like tyrosine-protein kinase 3	395	613	-	-
	Lele53g0999	627	Gene3D	Phosphorylase Kinase; domain 1	294	394	-	-
	Lele53g0999	627	Pfam	Protein kinase domain	325	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele53g0999	627	SMART	serkin_6	323	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele53g0999	627	SUPERFAMILY	LysM domain	164	212	IPR036779	-
	Lele53g0999	627	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	29	621	IPR044812	GO:0019199\|GO:0045087
	Lele53g0999	627	Gene3D	Transferase(Phosphotransferase) domain 1	395	615	-	-
	Lele53g0999	627	ProSiteProfiles	LysM domain profile.	164	210	IPR018392	-
	Lele53g0999	627	Gene3D	LysM domain	155	216	IPR036779	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0999	Lele-ChrLele53	19465990	19469156	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0999	308	627	Receptor kinase-like Gene Family	AT1G51940	51.064	1.66e-113	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele53g0999		Pkinase	1.4e-49	CL0016