Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0998 ATGGCAGGGGCAGCCTCTGCTCTCTTCCTTCTTGACATCAAAGGCCGCGTTCTCATTTGGCGCGACTACCGTGGCGATGTCTCCGCCGTCGAGGCCGAGCGCTTCTTCACCAAGCTCATCGAGAAAGAGGGAGATCCGCAATCTCAAGATCCAGTTGTATATGATAATGGTGTGACTTACATGTTTATACAGCATAGCAATGTCTACCTCATGATAGCAGCCAGGCAAAACTGCAATGCTGCTAGCCTTCTTTTCTTCCTACATCGTATAGTTGATGTGTTTAAGCACTATTTTGAAGAATTGGAAGAGGAATCACTTAGGGATAACTTTGTTTACGAACTCCTTGATGAAATTATGGACTTTGGCTACCCTCAGTATACCGAGGCAAAGATTCTAAGTGAATTTATCAAGACTGATGCTTATAGAATGGAAGTTACACAGAGACCTCCTATGGCTGTAACTAATGCTGTGTCTTGGCGTAGTGAAGGCATAAATTACAAGAAAAATGAGGTTTTCTTGGATGTGGTGGAGAGTGTTAACATACTTGTCAATAGCAATGGGCAAATAATTAGGTCTGATGTTGTTGGAGCACTGAAGATGAGAACATATTTGAGTGGCATGCCTGAGTGTAAACTTGGCCTAAATGATAGAGTACTATTAGAGGCACAAGGAAGGGCGACCAAGGGAAAGGCAATTGACTTGGAAGACATTAAATTTCATCAGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACCATTTCCTTCATACCACCAGATGGATCATTTGATTTGATGACATATAGGCTCAGCACACAGGTTAAGCCTTTAATTTGGGTGGAAGCTCAAGTTGAAAGGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTCAAGGAACGTAGCACTGCCACAAACGTTGAGATTGAGTTGCCTGTACCTGCTGATGCAACCAATCCAAATGTTCGAACTTCAATGGGGTCTGCATCATATGCCCCTGAAAAGGATGCATTGATCTGGAAAATAAGATCCTTTCATGGAGGCAAGGAGTACATGTTAAGGGCAGAGTTTCGTCTTCCCAGCATAACAGCTGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTTAAATTTGAGATACCATATTTTACTGTTTCTGGGATACAGGTAAGATACCTGAAGATAATTGAGAAAAGTGGGTATCAGGCCCTTCCATGGGTGAGATATATTACAATGGCTGGAGAGTACGAACTGAGGCTTATTTGA 1281 0.427 MAGAASALFLLDIKGRVLIWRDYRGDVSAVEAERFFTKLIEKEGDPQSQDPVVYDNGVTYMFIQHSNVYLMIAARQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFHGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0998 426 SUPERFAMILY SNARE-like 6 139 IPR011012 -
Lele53g0998 426 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 157 424 IPR036168 -
Lele53g0998 426 Pfam Clathrin adaptor complex small chain 7 129 IPR022775 -
Lele53g0998 426 Pfam Adaptor complexes medium subunit family 157 424 IPR028565 -
Lele53g0998 426 Gene3D - 5 144 - -
Lele53g0998 426 CDD AP1_Mu_N 6 143 - -
Lele53g0998 426 PIRSF AP_complex_mu 4 151 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PIRSF AP_complex_mu 143 426 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 343 354 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 159 187 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 303 318 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PRINTS Clathrin coat assembly protein signature 234 261 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 157 177 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 ProSiteProfiles Mu homology domain (MHD) profile. 168 424 IPR028565 -
Lele53g0998 426 FunFam AP-1 complex subunit mu-1 isoform 1 5 143 - -
Lele53g0998 426 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 254 268 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele53g0998 426 PANTHER AP COMPLEX SUBUNIT MU 5 424 - -
Lele53g0998 426 CDD AP-1_Mu1_Cterm 154 424 - -
Lele53g0998 426 Gene3D Mu homology domain, subdomain B 276 424 - -
Lele53g0998 426 Gene3D Mu homology domain, subdomain B 164 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0998 Lele-ChrLele53 19460799 19464637 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0998 53 19460799 19464637 Lele55g0479 55 3028221 3032085 hybridization
Lele53g0998 53 19460799 19464637 Lele56g0465 56 3421401 3430012 hybridization