Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0991 ATGTTTTTCACTTTCCTTCTCCGTCTTGACTGTTTTTTATTTCCCGGTTTTCTCGCATTCCAAACACAGCCAAAAAAGCGGAAAACTTTGTTTCCATCTGAAATGTCTGGTGCCCCCGTTCTGCTTCTTCTTCTTTTTCGCTTCGCGATTCCTTCTCTTTCTGATCCAAGAGCTACAGAAGCAGCTCTGATGTGTACAAACAGAACAACACCATTTTCCGAACGCAATATCTTCACAGACAATTTCTTAGCTGCGTTAGACGCTTTGACCCCTTCAATTGCCTGGCAAAGATACGCCTCTGTTATTAACGGGACTGGAAATTCCTCTGTTTATGCTTTCGCACAGTGCATGGAAGATCTATCTGAATGGGATTGTAATGTCTGCTTCGCACAGATCAAAACTCAAGTCCCACGGTGTTTACCATTTTATAGAGGCATTCGTGGTGGAAGAGTGTTCTTTGATGGGTGTTATCTAAGGTACGATGATTACAACTTCTTCAATGAAAGTCTCAGTGATGAAGACAGAACTGTGTGTGGAAGCAAAGAGTTTGGTGGGAATCAGAGTGTTTATGAGGCTAATGCAATGGAGTTAGTGAGGAAATTGAGCATTGAAGCACCTAAGAACGGTGGGTTCTTTGTGGGTTTTGTGAGAAGAAGTAATGTGACTGTTTATGGGTTGGCTCAGTGCTGGGAATTCGTTAATGGAAGTTCTTGTGCGAGATGTTTAGCAGAAGCTGTAAATAATATTAGTTCTTGTACTCCAAAAGAAGAAGCAAGAGTGTTGAATGCTGGATGTTATATGAGATATTCAATCCAAAAGTTCTATGACAACACAACCAATCCCCTCACAAGAAATCAAGGGAATAGCAGCAGTTCAACTATAATGCTGGCTGCATCAAGTGCTGGATCAGCTCTTGTACTGGTTGTTGCAGTAATTGCTTTCTTTGCAAGGAAGAGGATGCTGAGGAAGAAGAGAGAAAGAAGACAGTTTGGTGCACTTCTGGACAGAGTTTACAAGTCCAAGCTAAATATGACATACGAAGTTCTTGAAAGAGCCACAAATTACTTCAATGCCTCCAATAAGCTTGGACAAGGAGGTTCAGGTTCTGTTTATAAAGGAGTTTTGCCTGATGGGAATATTGTAGCCATAAAAAGGCTTAGCTTTCACACAACACAATGGGCAGATCATTTCTTCAATGAGGTTAATCTGATAAGTGGCATTCATCATAAGAATCTTGTAAGGCTTCTCGGTTGCAGCATTACGGGACCCGAAAGCCTTCTTGTTTATGAATACGTGCCAAACCAAAGTGTCCACGATCACTTTTCTGTGAAGCAAAAATCTCAACCCTTGACTTGGGAAGCACGGCGAAAAATCATATTGGGAACTGCAGAGGGATTAGCTTATCTTCATGAGGAATCGCCAGTGAGAATTATTCATAGAGATATAAAACTAAGCAACATTATGCTTGAAAATGACTTCACACCCAGGATAGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGATGGGACTCATATTAGCACTACTGTTGCTGGCACCCTCGGTTATATGGCTCCAGAGTATGTCATTCAAGGAAAATTAACGGAGAAAGCAGACATTTACAGTTTCGGAGTTGTTCTGATTGAAATCATATCAGGAAAAAGGAGTAGCTCTTTTGTTCTAAATGCATCCTCCATCCTACAAGTGGTTTGGAATCTTCATAGGTCAGGCAGCCTATGTAACATGGTAGATCTGAGGCTTGAAAGCGATTATCCGGCGGAGGAAGCTTGCCGGCTGCTTCGGATAGGATTGCTTTGTACACAAGCATCAGCAAATCTGCGACCATCAATGTCAGAAGTTGTGAGCATGATGAGCAGCAATAAGGAAATTGCAGAGCCAACACAACCCCCATTTCTGGTTCAAAACAGTGTAGAATGCAGCAAATCTGAATATAATTTTCATACTTCAGAGGACAGCAGCATGACTGAAAGCCTTATTCCTCCTAGATGA 2010 0.4159 MFFTFLLRLDCFLFPGFLAFQTQPKKRKTLFPSEMSGAPVLLLLLFRFAIPSLSDPRATEAALMCTNRTTPFSERNIFTDNFLAALDALTPSIAWQRYASVINGTGNSSVYAFAQCMEDLSEWDCNVCFAQIKTQVPRCLPFYRGIRGGRVFFDGCYLRYDDYNFFNESLSDEDRTVCGSKEFGGNQSVYEANAMELVRKLSIEAPKNGGFFVGFVRRSNVTVYGLAQCWEFVNGSSCARCLAEAVNNISSCTPKEEARVLNAGCYMRYSIQKFYDNTTNPLTRNQGNSSSSTIMLAASSAGSALVLVVAVIAFFARKRMLRKKRERRQFGALLDRVYKSKLNMTYEVLERATNYFNASNKLGQGGSGSVYKGVLPDGNIVAIKRLSFHTTQWADHFFNEVNLISGIHHKNLVRLLGCSITGPESLLVYEYVPNQSVHDHFSVKQKSQPLTWEARRKIILGTAEGLAYLHEESPVRIIHRDIKLSNIMLENDFTPRIADFGLARLFPEDGTHISTTVAGTLGYMAPEYVIQGKLTEKADIYSFGVVLIEIISGKRSSSFVLNASSILQVVWNLHRSGSLCNMVDLRLESDYPAEEACRLLRIGLLCTQASANLRPSMSEVVSMMSSNKEIAEPTQPPFLVQNSVECSKSEYNFHTSEDSSMTESLIPPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0991 669 FunFam Cysteine-rich receptor-like protein kinase 2 432 632 - -
Lele53g0991 669 FunFam Cysteine-rich receptor-like protein kinase 2 322 431 - -
Lele53g0991 669 FunFam Cysteine-rich receptor-like protein kinase 2 58 165 - -
Lele53g0991 669 Pfam Protein kinase domain 357 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0991 669 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 111 659 - -
Lele53g0991 669 Gene3D Transferase(Phosphotransferase) domain 1 432 637 - -
Lele53g0991 669 Gene3D Phosphorylase Kinase; domain 1 316 431 - -
Lele53g0991 669 SMART serkin_6 356 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0991 669 SUPERFAMILY Protein kinase-like (PK-like) 341 651 IPR011009 -
Lele53g0991 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Lele53g0991 669 Gene3D - 174 274 IPR038408 -
Lele53g0991 669 Gene3D - 59 165 IPR038408 -
Lele53g0991 669 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Lele53g0991 669 ProSiteProfiles Gnk2-homologous domain profile. 59 165 IPR002902 -
Lele53g0991 669 FunFam Cysteine-rich receptor-like protein kinase 3 174 274 - -
Lele53g0991 669 ProSiteProfiles Gnk2-homologous domain profile. 171 274 IPR002902 -
Lele53g0991 669 CDD STKc_IRAK 362 624 - -
Lele53g0991 669 Pfam Salt stress response/antifungal 182 270 IPR002902 -
Lele53g0991 669 Pfam Salt stress response/antifungal 65 163 IPR002902 -
Lele53g0991 669 ProSiteProfiles Protein kinase domain profile. 356 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0991 Lele-ChrLele53 19399997 19403114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0991 51 521 Receptor kinase-like Gene Family AT1G70530 61.441 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele53g0991 Pkinase 7.5e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0991 53 19399997 19403114 Lele55g0486 55 3078542 3081647 hybridization
Lele53g0991 53 19399997 19403114 Lele56g0471 56 3459267 3465824 hybridization