Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0989 ATGGAAGAAATCTACGGAGCGCCTTTGTCGGCGGACTATTCTGACAAGGCCTTGATGACGCCGGAGAACCTCATATTTGCCGCTGATTACCAGAGTTTTCTCCCATCCTCCTCCGGCGGCTTCCATGATCGGAATCCGATGTTCGGATCCGATGACTTGCTTTCTGCCATTACCGAAGCTGAGCCGTCGTCTGTTGCCCCTGAAATTCAACCTGAAGACGATACCTCCCTTCTCATCAAAGCTAAAATCTCTTCTCATCCTCACTACCCTCGTCTCCTCCAAGCTTTCATCGATTGTCAGAAGGTAGGAGCGCCTCCAGAAATAGCGGGTCTGTTAGACGAAATCCAGCGAGAAAACGATGTTTGTGAGCGAGAGGTCGTTTCCAAGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCCCGGCCTTTTGACGAAGCAACCACGTTCCTCAACGAGATCGAAATCCAGCTCAGCCATCTCTGCTCTGGTGCTTACGTTCCAACCTTTTCTGATGATGGAGGCTTGTCTTCAGAAGAAGATATAAGCGCTGGAGATGGTGATGCACAAGATGGTGGATTGCGTGGGGAAGATCGAGAGCTGAAGGATAGACTCTTAAGTAAGTTTGGGGGTCGGATTAGTAGTTTGAAATTGGAGTTCTCGAAGAAGAAAAAGAGGGGCAAGCTTCCCAAGGAAGCCAGGCAAACGCTCCTTGACTGGTGGAATGTTCACTACCAATGGCCTTACCCTACGGAAGCTGATAAGATAGCACTGGCAAAGTCGACGGGGCTACATCAGAAGCAAATCAACAATTGGTTTATTAATCAAAGGAAGCGTCACTGGAAACCGTCGGAGAATCTGCAGTTCTCTGTTATGGATAATCTAACCGGAGGCGTCTACTCCGATCATCATGTCATTCTTGCTCCGTTCTCGGCTTCAAGGCCCCTTGCTTCTCCCCGTTTAAGATGCAGCCCAGTTCGATGTGCCGCTGAACGCCAGGCCTCGTTTAATCGCATTGCTCCGGTCTATTATTACCTCAATGATTTGCTGAGCATGGGTCAGCATCGCATATGGAAGCGTATGGCGGTGTCTTGGAGTGGAGCGAAAATGGGAGACTGTGTATTGGATGTGTGCTGTGGAAGTGGGGATTTAACGTTTCTATTGCCTGAGAAAGTTGGGTCTAATGGCGAGGTGACTGGTCTTGACTTCTCAAATAAGCAATTGTCGATTGCTTCATCTCGGCAGAAGCTGCTTTCAAAGGACTACTTCATGACAATTCATTGCTTGGCAGATGGGTTGAAGGGTCTGCGAAATGTGGTTGATAGGCGCAAGGCCATGCAAGAATTATTACGAGTTTTAAAAGCCGGCTCCCGAGTGTCCATCCTTGACTTTAACAAGAGCGATCAGTTTTTGACTGCTTCAGCTATGGAATGGACGATTGACAACGTTGTTGTCCCAGTGGCCTCTGGTTATGGCCTCTACGAAGAGTATAGATATCTAAAAAGCTCAATCAGAGAGTTTTTGACAGGGAAGGAATTGGAGGAACTTGCTTTAGAAGTTGGTTTTTCTACTGCACGTCATTACGAGATCCAGGGAGGCTTTATGGGCTGCTTGGTAGCAAAGCGTTAG 1674 0.4797 MEEIYGAPLSADYSDKALMTPENLIFAADYQSFLPSSSGGFHDRNPMFGSDDLLSAITEAEPSSVAPEIQPEDDTSLLIKAKISSHPHYPRLLQAFIDCQKVGAPPEIAGLLDEIQRENDVCEREVVSKCFGDDPELDEFMETYCDLLIKYKSDLSRPFDEATTFLNEIEIQLSHLCSGAYVPTFSDDGGLSSEEDISAGDGDAQDGGLRGEDRELKDRLLSKFGGRISSLKLEFSKKKKRGKLPKEARQTLLDWWNVHYQWPYPTEADKIALAKSTGLHQKQINNWFINQRKRHWKPSENLQFSVMDNLTGGVYSDHHVILAPFSASRPLASPRLRCSPVRCAAERQASFNRIAPVYYYLNDLLSMGQHRIWKRMAVSWSGAKMGDCVLDVCCGSGDLTFLLPEKVGSNGEVTGLDFSNKQLSIASSRQKLLSKDYFMTIHCLADGLKGLRNVVDRRKAMQELLRVLKAGSRVSILDFNKSDQFLTASAMEWTIDNVVVPVASGYGLYEEYRYLKSSIREFLTGKELEELALEVGFSTARHYEIQGGFMGCLVAKR 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0989 557 SMART HOX_1 237 302 IPR001356 GO:0003677
Lele53g0989 557 CDD homeodomain 247 299 IPR001356 GO:0003677
Lele53g0989 557 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Lele53g0989 557 SMART ELK_2 215 236 IPR005539 GO:0003677
Lele53g0989 557 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Lele53g0989 557 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 346 486 IPR029063 -
Lele53g0989 557 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Lele53g0989 557 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Lele53g0989 557 Gene3D Vaccinia Virus protein VP39 353 557 IPR029063 -
Lele53g0989 557 CDD AdoMet_MTases 389 476 - -
Lele53g0989 557 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Lele53g0989 557 Gene3D - 234 305 - -
Lele53g0989 557 Pfam ubiE/COQ5 methyltransferase family 349 550 IPR004033 GO:0008168
Lele53g0989 557 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Lele53g0989 557 MobiDBLite consensus disorder prediction 192 212 - -
Lele53g0989 557 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Lele53g0989 557 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 304 - -
Lele53g0989 557 Pfam ELK domain 215 236 IPR005539 GO:0003677
Lele53g0989 557 SUPERFAMILY Homeodomain-like 236 309 IPR009057 -
Lele53g0989 557 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0989 Lele-ChrLele53 19384397 19392918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0989 1 318 Homeobox Transcription Factor Family AT1G23380 63.636 2.39e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele53g0989 Ubie_methyltran 2.3e-35 CL0063