Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0983 ATGGTGATTGTAGCATCACTACCTGGACGCAACCTCTTCTCTTCCTTACCTTCGACGCCACCACCCTCCGACCCCACCGTCAACACCGCCACTCCTTCCCCTCCGATCCCAATTCCTAAATACCCACCTCCTCGCAGATTCCTTAAGTCCCAAAAAAACCCTCCTGAACCCTCAAAGCCCACTTCGAATCCTGCCCTGAAGCACCATCGCAATTCCAAGTACTACAAACCCGTCAAAGATGGCGTTATTACATCTGAAGGTGATCGCTCCGTCGTCATTGGCGAGTCCGGAGTGTCCTATCTTCTTCCCGGAGCCCCATTCGAATTCCAGTTTAGTTATTCCGAGACGCCTAAGGTAAAGCCACTGGCGATTCGGGAGCCGGCGTTCTTGCCGTTCGCGCCGCCCACAATGCCGAGGCCTTGGACTGGTAAAGCACCATTGAAGAGCTCAAAGAAGAAAATCCCACTCTTCGATTCTTTCAATCCTCCCCTTCCGGGAACGAAAGGGGTGAAGCATGTTGAAATGCCAGGGCCGTTTCCAGCTGGGAAGTATCCACAGGAGGGGAAGACGAGGGAGGAGATACTTGGGGAGCCTTTGAAGAAGTGGGAAATAAGAATGCTTGTTAAACCCGTGTTGGGTGAAAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACACATAACATGTTGGAGTTAATACATTCACATTGGAAGCGAGCCCGTGTTTGTAAAGTTCGTTGCAAAGGTGTCCCAACCGTAGATATGGATAACGTTTGCTATCATCTTGAGGAGAAGACTGGGGGTAAAATAATTCATCGGGTTGGTGGCGTGGTTTATCTTTTCCGTGGGAGAAATTACAACTATCGTACTCGTCCTCAGTATCCATTGATGCTCTGGAAGCCAGCTGCTCCAGTTTACCCAAAACTCATCCAAGAAGCTCCGGAAGGATTAACAAAAGCTGAAGCTGACGAATTCCGTAAGAAAGGAAAAAGGCTGCTAACAATATGTAAATTAGCTAAAAATGGAGTATATGTTTCCCTTGTGAAAGATGTAAGACATGCTTTTGAAGGAAGTCCATTGGCGAAAATTGACTGCAAGGGGTTGGAACCCAGTGATTACAAGAAAATAGGAGCCAAGCTTAAGGAATTGGTTCCTTGTGTGCTGCTGTCCTTTGATGATGAACAGATATTAATGTGGAGGGGGAAAGATTGGAAATCTATGTACCCTCAAGCTCCTCCAGTTCTAAGCCTTCCTGAAGTTGGTGTTGCAACGAACTTGCACAATTCAGGTGAGACTGAGGATGATCAAAATAAGGATGATAGAAACATGATGCTGTCGAGCCCGAAAATGACATCGCTGTGGAAGCGTGCGATAGAGTCGAGCAAAGCGCTGTTGTTGGATGAGATTATTGTTGATCCTGATGCTCTCTTGGAGAAGGTAGAGGAGTTTGAAGTTGTTTCGCAGGCCACCGAACACTCCTCACCGGCACTCATATTTGCCAGCGAAGATGGTGATGCTGCTACTAAGGGCTCACTTGCTGACTTTGAAGAAGACTACGGTTATCCTAGTGATGGCTTCGCTACCGAGGATGACGATGACGATGACGAAGATTATCTGTATGACAACAGTGATGAATATAAAGAAGATGAATCGAATGCTGAGGCGGGTTCATCAGCCCCACCTGGATCGTTACCTATTGATTTAATTGCTGACAAGCTCAGAATAAGACGAGACGAATAA 1740 0.4713 MVIVASLPGRNLFSSLPSTPPPSDPTVNTATPSPPIPIPKYPPPRRFLKSQKNPPEPSKPTSNPALKHHRNSKYYKPVKDGVITSEGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPLPGTKGVKHVEMPGPFPAGKYPQEGKTREEILGEPLKKWEIRMLVKPVLGENRQVNLGRDGLTHNMLELIHSHWKRARVCKVRCKGVPTVDMDNVCYHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKAEADEFRKKGKRLLTICKLAKNGVYVSLVKDVRHAFEGSPLAKIDCKGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPQAPPVLSLPEVGVATNLHNSGETEDDQNKDDRNMMLSSPKMTSLWKRAIESSKALLLDEIIVDPDALLEKVEEFEVVSQATEHSSPALIFASEDGDAATKGSLADFEEDYGYPSDGFATEDDDDDDEDYLYDNSDEYKEDESNAEAGSSAPPGSLPIDLIADKLRIRRDE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0983 579 ProSiteProfiles CRM domain profile. 315 411 IPR001890 GO:0003723
Lele53g0983 579 FunFam CRS2-associated factor 1, chloroplastic 316 411 - -
Lele53g0983 579 MobiDBLite consensus disorder prediction 523 544 - -
Lele53g0983 579 ProSiteProfiles CRM domain profile. 197 293 IPR001890 GO:0003723
Lele53g0983 579 Gene3D - 317 411 IPR035920 -
Lele53g0983 579 MobiDBLite consensus disorder prediction 18 50 - -
Lele53g0983 579 Gene3D - 198 294 IPR035920 -
Lele53g0983 579 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 52 572 IPR044599 GO:0000373
Lele53g0983 579 Pfam CRS1 / YhbY (CRM) domain 317 400 IPR001890 GO:0003723
Lele53g0983 579 Pfam CRS1 / YhbY (CRM) domain 201 282 IPR001890 GO:0003723
Lele53g0983 579 FunFam CRS2-associated factor 1, chloroplastic 198 293 - -
Lele53g0983 579 SUPERFAMILY YhbY-like 198 292 IPR035920 -
Lele53g0983 579 SMART CRS1_YhbY_2 317 400 IPR001890 GO:0003723
Lele53g0983 579 SMART CRS1_YhbY_2 199 282 IPR001890 GO:0003723
Lele53g0983 579 SUPERFAMILY YhbY-like 317 408 IPR035920 -
Lele53g0983 579 MobiDBLite consensus disorder prediction 515 565 - -
Lele53g0983 579 MobiDBLite consensus disorder prediction 1 73 - -
Lele53g0983 579 MobiDBLite consensus disorder prediction 425 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0983 Lele-ChrLele53 19313800 19317108 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0983 53 19313800 19317108 Lele55g0015 55 131538 136985 hybridization
Lele53g0983 53 19313800 19317108 Lele56g0477 56 3537431 3545597 hybridization