Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0943 ATGCCATATTCTGCCATGTCTTCTTGGATTCACTATCAAATTCTGCAGAATAATGGTGACATGGCTGGGCAGCCTATTCTTTCTCCATCTCCTTCTTCTCCTCCATTGCCTTACATTTCTAACTTCCAGAAGCAAATGAGCCCACCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTTATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATAGATACCCAGATATGTCTGAATCAGATACTTACCAGAGGCAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTTATAGATGCTCTTCCTGTCTTCTTTTACAAGGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAATTCTCAGATCTTGACAAGTTGAGGTTGCTGCCCATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCACCAGGATTTCCCTTTGACAACCCAGGTTTTGATTTTGAAGAGCCAAGAAGGGAAGAAGATGGGGTTTCAGCAGGCGCTGTTGGAGCTGATTCTGCTTCTTTTCACAAACATGCAGAAAATCACATTATGAGCGGAAGAAGGGTGTTTTCTGTGAGACTTGGAAAATTTAGAAGCTCAAATACAAGACAAGGAGTAGGGAAATGTGAAGGAGAGAGCAGTGCGAGTAGTAGTAATTTGGATGCAAGGAGATGTTATTCAATGGGGTCATTCCAGTATGTGGTTGCTGATTCAGACTTAAGAGTAGCTTTATGCCCTAATAGGGGTGATGCAAGCAGTAGCAGTATGAGACAGTTGAAAGCACGAGTAGCTCAAATTGGGAATAATCCTTCCTCTGATTCTGACTTTGAGGGCAAAAAACTCAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAATCCATATGGGAAATTCTACTAATGTCACTGCAAATTTGCCTTGGATGAATAGAACTAGAGAATCAGAACCTGTTCTGCTCTTTCTTATCACATGTATTTCCAGGAAAGATATATACTTTGCAGAAACTATAAGCAAAAAAGAGAAAAAGGAAAAGTTATGGAGTGTAGTTTTGCGCTAG 1275 0.4024 MPYSAMSSWIHYQILQNNGDMAGQPILSPSPSSPPLPYISNFQKQMSPPPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDLDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFPFDNPGFDFEEPRREEDGVSAGAVGADSASFHKHAENHIMSGRRVFSVRLGKFRSSNTRQGVGKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDASSSSMRQLKARVAQIGNNPSSDSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVIHMGNSTNVTANLPWMNRTRESEPVLLFLITCISRKDIYFAETISKKEKKEKLWSVVLR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0943 424 CDD RING-H2_PA-TM-RING 149 192 - -
Lele53g0943 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 53 352 - -
Lele53g0943 424 FunFam RING-H2 finger protein ATL46 112 197 - -
Lele53g0943 424 Pfam Ring finger domain 149 192 IPR001841 -
Lele53g0943 424 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Lele53g0943 424 SMART ring_2 150 191 IPR001841 -
Lele53g0943 424 SUPERFAMILY RING/U-box 129 198 - -
Lele53g0943 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0943 Lele-ChrLele53 19049987 19051536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0943 51 365 C3H Transcription Factor Family AT2G18650 40.116 7.01e-58 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1067 49 6891500 6903570 Lele53g0943 53 19049987 19051536 CCT
Lele50g1155 50 7756382 7775005 Lele53g0943 53 19049987 19051536 CCT
Lele51g1081 51 6986263 6998566 Lele53g0943 53 19049987 19051536 CCT
Lele53g0943 53 19049987 19051536 Lele54g0924 54 15701206 15702746 ECH
Lele53g0943 53 19049987 19051536 Lele53g0943 53 19049987 19051536 ECH
Lele53g0943 53 19049987 19051536 Lele55g0530 55 3421353 3424640 hybridization
Lele53g0943 53 19049987 19051536 Lele56g0517 56 3782881 3784437 hybridization