Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0924 ATGATTCTTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATTTCTTCTCCCATTTCAAGCATACATACTCCTTCCTCTCCACTTCTTCGCCTTCTCTGGTTAACGTTCCCTTCATTTCGCTTTCCCGTCCTCGCCAACGGCTATTCCGGGCGTTTGGGAGTACCGTCGTGGCTGTAGCAGATGCAAAAGGGAGAGATACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTGGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACGTTGTTATTGCAGCAGAGACCGGTAGTGGTAAAACACACAGTTACCTAGTTCCCCTAATTGATAAGCTACGAGGTTCCAACAACAATTCTGAAAATACTGCCCATAATCAAAAAGAGTCTCTCTGTAAGATTCTGCTCGTTCTGTGTCCTAATGTACAACTCTGTGAGCAAGTAGTTCAAATGGCTAACAGTATTTGTGGGGACAATGGTGCATCCATCGTTAGTGTGGCAGCCATGTGTGGCAGACAGGGATGGCCAATTCATGAACCAGATATCATTGTGACAACACCTGTTGCTCTTCTAAACTATGTTGAAAAAAACAGAAATCGTCGAATGGAATTTATGCGCGGTGTTAAATATGTGGTATTTGATGAAGCCGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTATTATCCCAATCAAAAGAACCAGCATCAGAGTTACCATCGGAGCTAGAATCTGCCATGTCATCGCACAGTGTTATAGACGGTGAACAGAAACAGCCCACTGACGACACTATCTCAGAAGATGGGGATGATGATACCCATTCGGTTGACACCAGTAATGAAGCTGGTTCAATCAAAAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGGGCAATATTGAAGCATATGTTTCCTGATGCCGATTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGCTGGATGAACTCATAAAAGCTGTGAGACAAGGCTTCAGTCAAGATTTGGATAGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAAGCCGTTGAAGCTGTGGCAAAGATATTGGTCAGATCTGGCATTGAATGTTTACACTATCATAAGGATCGCTCCTTGGATGAGCGAGCTAGGGCCTTAGTTGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGAGTTGGCAGAACTGGTCGAGCTGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCGGTTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGGCAAACCTAGTCAGAGATTCAGCCATTGTTAAAGAGAGTGCTCTGGCTTGA 1737 0.4433 MILYRSALMLHLQIPSIRSHFFSHFKHTYSFLSTSSPSLVNVPFISLSRPRQRLFRAFGSTVVAVADAKGRDTFLAEENVSWNSLGLSDAISRALSGIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRGSNNNSENTAHNQKESLCKILLVLCPNVQLCEQVVQMANSICGDNGASIVSVAAMCGRQGWPIHEPDIIVTTPVALLNYVEKNRNRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQSKEPASELPSELESAMSSHSVIDGEQKQPTDDTISEDGDDDTHSVDTSNEAGSIKRRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDADWVSGNYLHCHNPRLEQRWVEVTVDTQLDELIKAVRQGFSQDLDSFGGISRTMVFANTVEAVEAVAKILVRSGIECLHYHKDRSLDERARALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNRELVDAVRRAGELGRPVERAFSRKRSFRNKIKKRAANLVRDSAIVKESALA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0924 578 MobiDBLite consensus disorder prediction 277 325 - -
Lele53g0924 578 Gene3D - 64 368 IPR027417 -
Lele53g0924 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Lele53g0924 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 566 IPR001650 -
Lele53g0924 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 548 - -
Lele53g0924 578 Pfam DEAD/DEAH box helicase 106 270 IPR011545 GO:0003676|GO:0005524
Lele53g0924 578 CDD DEADc 91 271 - -
Lele53g0924 578 MobiDBLite consensus disorder prediction 277 297 - -
Lele53g0924 578 SMART helicmild6 434 514 IPR001650 -
Lele53g0924 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 370 IPR014001 -
Lele53g0924 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 526 IPR027417 -
Lele53g0924 578 CDD SF2_C_DEAD 386 523 - -
Lele53g0924 578 SMART ultradead3 99 389 IPR014001 -
Lele53g0924 578 Gene3D - 387 576 IPR027417 -
Lele53g0924 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0924 Lele-ChrLele53 18863300 18867462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0924 329 540 Eukaryotic Initiation Factors Gene Family AT5G11200 27.869 4.69e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0924 53 18863300 18867462 Lele49g1044 49 6718150 6720150 CCT
Lele53g0924 53 18863300 18867462 Lele50g1135 50 7525322 7527317 CCT
Lele53g0924 53 18863300 18867462 Lele51g1062 51 6835657 6837658 CCT
Lele53g0924 53 18863300 18867462 Lele52g1102 52 7470835 7472830 CCT
Lele53g0924 53 18863300 18867462 Lele55g0552 55 3567596 3571555 hybridization