Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0921 ATGCCGACGGATAGATCAAAATCGGAGAAGCGCGATACTGTGAAACAGCTCCGGCGGGACCCTTATGAGGTTCTTGACGTCTCGCGGAACTCAACTGATCAAGAAATCAAAACTGCTTACCGGAAATTGGCACTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCTGCGGATATGTTCAAAGAGGCCACCTTTTCATATAATATATTGTCAGATCCTGAAAAACGCCATCAGTATGACTCTTCTGGTTTTGAGGCTGTTGAATCAGATAACCAAGACTTGGAGTTGGATCTTTCGAGTTTAGGTGCTGTAAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTTGTTGGTGCAGTGATCATTCATCCACTTCCATTGGGGCTGCCTATATCTAAGAGGGTTGAGAAGCAATGTGCTCACTTTTATTCAGTTACATTATCAGAAGAAGAAGCACAGGATGGATTTGTTTGCCGTGTGCAATCATCGGACAAAAGCAAGTTCAAATTACTATATTTTGATCAAGAAGAGACTGGTGGACTAAGCCTTGCACTCCAGGACGACAGTGCAAAAACAGGGAAGGTAACTTCTGCGGGAATGTATTTTCTTGGGTTTCCTGTTTATCAGTTGGATCAAACCATGAGTTCAACGGCTGCTGCTAAGGATCATGATGCATCATTTTTCAGAAAGCTAGATGGGTTCCAACCTTGTGAATTAACAGAACTAAAGGCTGGTACTCATGTATTTGCCGTTTATGGTGACAATTTTTTCAGAAGTGCAAGCTACACTATAGAAGCTTCATGTGCTGCTCCTTTCAGACGAGAAAAAGAAAATCTCAGAGGCGTAGAAGCCCAAATTTTATCCAAAAGGGCGGGCCTAACGAAATTTGAGTCGGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAGTAGATATACACAAGAAATGCAGGCGATTGATGAGCTACTTAAGCAAAGGAATGAAATACGTGCATCATATACTGTTGCTCCATTAAAACGAAGTAGGACAAAGAGGAGTAAAAGTTCTTCCAAGGAGGAAGGAGAAGATGGCCAAGCAAGAGAGAAGAAACATACAAGGGAGAGACTGAGGAAGAAGAGATGGTATAACATCCACTTAAAAGCTGATAAGAGAAAAGCTTGCTAG 1224 0.4158 MPTDRSKSEKRDTVKQLRRDPYEVLDVSRNSTDQEIKTAYRKLALKYHPDKNANDPKAADMFKEATFSYNILSDPEKRHQYDSSGFEAVESDNQDLELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALVGAVIIHPLPLGLPISKRVEKQCAHFYSVTLSEEEAQDGFVCRVQSSDKSKFKLLYFDQEETGGLSLALQDDSAKTGKVTSAGMYFLGFPVYQLDQTMSSTAAAKDHDASFFRKLDGFQPCELTELKAGTHVFAVYGDNFFRSASYTIEASCAAPFRREKENLRGVEAQILSKRAGLTKFESEYREVLAQFTEMTSRYTQEMQAIDELLKQRNEIRASYTVAPLKRSRTKRSKSSSKEEGEDGQAREKKHTRERLRKKRWYNIHLKADKRKAC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0921 407 Pfam DnaJ domain 20 82 IPR001623 -
Lele53g0921 407 SMART dnaj_3 19 77 IPR001623 -
Lele53g0921 407 FunFam Chaperone protein dnaJ 16 4 102 - -
Lele53g0921 407 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lele53g0921 407 Gene3D DnaJ domain 4 103 IPR036869 -
Lele53g0921 407 SUPERFAMILY Chaperone J-domain 19 89 IPR036869 -
Lele53g0921 407 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lele53g0921 407 PRINTS DnaJ domain signature 77 96 IPR001623 -
Lele53g0921 407 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lele53g0921 407 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lele53g0921 407 CDD DnaJ 20 74 IPR001623 -
Lele53g0921 407 MobiDBLite consensus disorder prediction 354 392 - -
Lele53g0921 407 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lele53g0921 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 406 - -
Lele53g0921 407 MobiDBLite consensus disorder prediction 366 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0921 Lele-ChrLele53 18844641 18847493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0921 18 83 C2H2 Transcription Factor Family AT1G74250 42.254 5.50e-10 59.3