Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0920 ATGGAAAGAGAATATGGCTCTGATATTTCTCCTTCATGGGATAATGGTGAATATGGCCATTCTTCTATGGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAACCCATCTCATATCAACGAGGGCTGTGCCAAGGACTCTGCGGAAGGAGATGAAAGTGCAAATTCGTCAAACTCAGTTTCATCAGGAGGCGAGAAAACTGATGAACAGCAGGAGAAGAGCTCATCTGCAACAAGAGACAACAACACATCATCAGATCATGAGAGGAAGTTCGAGTGTCAATATTGTTCTAAAGAATTTGCAAACTCGCAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAGGGCCAGCTTAAGCTATTACCTTCAGCCTTTTCATAACAACCCTGGTTTTTCCTTCGACGGCTCTAATACGCCTTGGTTCTATGATCCCTCTTCTTATAATAAGTCTGAGTTTTCTTTGTATGAAGAACCTCAGATTAGCTTCAAAACCAATGATCAAGATGCCATTAACATTCTTAATGGTTTTGATCAGAAATCTAATTGGAATTCTCATCCATCCCTTTCCCTTCCTTCTCAACAAGATACTTGTATGTTCACTTTATCACATGCAGATCATAGGCCTTTCATCTTCCCTGCAGCTTCAAACCAGAGCCATAGTAATAAGGGTTTGGATCTTCAACTAGGCCTCACTTTGCAGTCAAATACACATATTTAG 759 0.4124 MEREYGSDISPSWDNGEYGHSSMEKRLRLFGFELNPSHINEGCAKDSAEGDESANSSNSVSSGGEKTDEQQEKSSSATRDNNTSSDHERKFECQYCSKEFANSQALGGHQNAHKKERMKKKRLQLQARRASLSYYLQPFHNNPGFSFDGSNTPWFYDPSSYNKSEFSLYEEPQISFKTNDQDAINILNGFDQKSNWNSHPSLSLPSQQDTCMFTLSHADHRPFIFPAASNQSHSNKGLDLQLGLTLQSNTHI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0920 252 MobiDBLite consensus disorder prediction 50 65 - -
Lele53g0920 252 SUPERFAMILY beta-beta-alpha zinc fingers 87 118 IPR036236 -
Lele53g0920 252 Gene3D Classic Zinc Finger 63 137 - -
Lele53g0920 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Lele53g0920 252 MobiDBLite consensus disorder prediction 38 87 - -
Lele53g0920 252 PANTHER ZINC FINGER PROTEIN 5 21 247 IPR044299 GO:0010090
Lele53g0920 252 Pfam C2H2-type zinc finger 91 116 - -
Lele53g0920 252 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0920 Lele-ChrLele53 18833368 18834126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0920 26 129 C2H2 Transcription Factor Family AT1G68360 43.269 8.13e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g0920 zf-C2H2_6 2.8e-06 CL0361