Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0913 ATGGAGGTCTGTAATCTATTGCCGTCAGATTCCGAGGAGGTTCACGTCTTGGCCGTCGATGACAGCCTCGTCGATCGGAAAGTCATCGAGCGCTTGCTCAGGATTTCAGCTTGTAAAGTCACTGCTGTGGACAGCGGAATAAGAGCTCTGCAATTCCTTGGACTCGACGACCAGAAATCTCCTTCCGAATTGGACGGCTTTGATGGCTTAAAGGTGGATCTAATCATCACTGACTACTGCATGCCTGGAATGACCGGCTATGAATTACTCAAGAAAATCAAGGAATCTTCCACCTTCAGAGAAATTCCAGTGGTGATCATGTCCTCTGAAAACGTTTTGCCCCGAATAGACAGGTGTTTGGAAGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAGTTATCAGACGTGAAGCGTTTAAGGGATTACATGACGACAAGAGAAGTTAAGGCGGGAAGTCAGGAGAGAGAAGGAGAAAACGGCGTCAGGTTCACCAGAAGAAAGCAGACGGAATCCTCCGATCTGGATTCATCGCCGCCGTCCGTTACCTCCTCGTCATCTGCTCTGTCATCGTCGCCGTCATCACCGTCGGATTTAGCCTCGCCGTCCCCGTCGCCGCCGTTGTCCCCCTCCCCTTCGCCTTCACCTTCACCTTCGTCGCTCGATTCTCCAATCGGACGGCTTAGAATGACCACCACCGATTGA 705 0.5135 MEVCNLLPSDSEEVHVLAVDDSLVDRKVIERLLRISACKVTAVDSGIRALQFLGLDDQKSPSELDGFDGLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLRDYMTTREVKAGSQEREGENGVRFTRRKQTESSDLDSSPPSVTSSSSALSSSPSSPSDLASPSPSPPLSPSPSPSPSPSSLDSPIGRLRMTTTD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0913 234 MobiDBLite consensus disorder prediction 199 219 - -
Lele53g0913 234 CDD REC_typeA_ARR 16 140 - -
Lele53g0913 234 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 181 IPR045279 GO:0009736
Lele53g0913 234 SMART REC_2 14 141 IPR001789 GO:0000160
Lele53g0913 234 ProSiteProfiles Response regulatory domain profile. 15 145 IPR001789 GO:0000160
Lele53g0913 234 Pfam Response regulator receiver domain 16 137 IPR001789 GO:0000160
Lele53g0913 234 MobiDBLite consensus disorder prediction 220 234 - -
Lele53g0913 234 MobiDBLite consensus disorder prediction 148 234 - -
Lele53g0913 234 Gene3D - 14 193 - -
Lele53g0913 234 MobiDBLite consensus disorder prediction 148 173 - -
Lele53g0913 234 MobiDBLite consensus disorder prediction 174 198 - -
Lele53g0913 234 SUPERFAMILY CheY-like 14 140 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0913 Lele-ChrLele53 18776423 18777482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0913 8 209 Response Regulator Gene Family AT1G59940 61.722 4.22e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele53g0913 Response_reg 4.2e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0913 53 18776423 18777482 Lele54g0898 54 15504165 15505186 ECH
Lele53g0913 53 18776423 18777482 Lele53g0913 53 18776423 18777482 ECH
Lele53g0913 53 18776423 18777482 Lele55g0562 55 3651483 3652538 hybridization
Lele53g0913 53 18776423 18777482 Lele56g0542 56 3980266 3981234 hybridization