Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0905 ATGAGGTACCACATCAAAGTCGTAATTTTCAGATCAATTACAGTTACAGTTATACTTAACTTCCTTTTTGCAGGATTTGGCTCTTCGAAGGTGATCTGTGTCAAAGGTTGGGTTAGAATTCTTGCTTCTATTCCTGTATCTGTTTGTTTCCTCTGGTTAGATCTGCTGTTTGCTTCTAGCTCTTGTTCAAATGAGCAACTTTGGTCCAGAGACGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGGTGTCTTCCCTAGGAGAAACATCGGGGCATCCACAGATGATGGCTGGAGGTGCTCAAAAGCTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAAAAATATGACGAGTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGCGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGACGAAGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGACCATGTCTACAAGTCGTTTCTAGACATATTGAACATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTTACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACTCACTTTCTTCCTGATACTTCCGCAACAGCATCTACACATTATGCTCCTTCTCGGAACTCCATGCCTCGGGATAGGAGCTCTGCAGTGCCAAGGCAAATGAGTGTTGAAAAGAGAGGACGGACTGTGGATTCTCATGGTGATCATGACCTCAGCGTTGGTCATTCTGATCCAGATCAGGACAGAGTTATGATTAAGGCAGAAAAGGATCAGAGGAGGCGTGCTGAGAAGGAAAAGGACCTCAGAGAAGAGAAGGATAGGAGAGATCAGGAACGGGATGATAGAATTTATGGGCCCGATGGTAGCCAAGACTTTACCATGCCACGCTTCCCCCTCAAACAGAAATCTGGTCGTAGGACAGATGAGATTGGTGCTGAAACATTGCATCAAGGTGGCGATTCTGATGAAAATTTAAGCATGCGCCCTATGTCATCCACCTGTGATGACAAAAGTATTGTGAAGGGTATGTATAGTCAAGAGTTTGCTTTTTGTGAAAAGGTCAAGGAGAAATTACGAAATCCTGATGTTTATCAAGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTAATGAATTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGTTGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATCGCAGCTAAACTGGCAAAGGTAGAGGACAAGGACAGAGATAGAGCTCGAGATCATGATAGGGATGATCGGGCTAAAGAAAGAGATCGTGAACTACAAGAAAGGGACAAATCTTCTGCTTTTATTAGCAAGGACGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAATATTACGGAAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACACCCAGCTACCGTCTCCTACCAAAAAATTTCACACAGTATCCGATACCCATGGCTAGCCAGAGAACTGAGCTTGGTGCTGAAGTATTGAATGATCATTGGGTTTCTGTCACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGCGAGTAGAAGAGCTCTTGGAAAAGATCAATAATAATGTTATTAAAGCAGAAAGCCCTATTCGCATTGAGGACCACTTGACAGCTCTAAATCGAAGGTGCATTGAACGATTATATGGTGATCATGCGCTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGTACAAAAGCCTTACTGGCTGAAATAAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTATTCCAAGTTTGGAATTTGAGTATCCAGACCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTCGGTGTTCCTTCTCGACCCCAGGGTGCGGAAGATAAAGAAGATGTCATCAAGGCTAAGCATAATTCTGTTAAAGTTGGCACTACAAGTTTTGGTGGCAGTGATGGTAGTCCTGGTGTAGTTGCAAATGTAACGAATTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTCCATTGGAACAGTCAAATTCCAGGAATGAAGCTTTGGATTACAATAAACATCATGAGGGAACGCTTATGAATCCATCCATGCCTGATGAGGTATTGGTGGCCAGCAAACAAGGTCATTCCAATGAACGGTTAGTGAATGCTAATGCCTTAATGGCTTCTGGAATGGAACAAATTAATGGGAGAACAAACATAGATAATGCATCAGGGCTTACTGCTACCCCATCAAGACCTGGTAATGTTGCTGCTGAGGGAGGAAATTTTCCTTCGCCAGAGGTTTGTGATTCTACAAGACCAGCTACCCCTATAAATGGGGCCATCATAGAAGGCAACAAAGTTCACAGATACCAAGAAGAACCTACTGGACACTTCAAAAGTGAAAGAGAAGAGGGCGAACTATCTCCTAATGGAGATTTTGAGGATAACTTTGCAGTATATGGAGATACTAGTTTAACAGCGGTAGTGCATAAAGGAAAGAATGGTGGTGTGAGTATGCAATACCAAAATAGAAATGAAGAAGAAGGTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGGGAAGGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCTGACGGTGAGGAGTGTTATCAAGAAGAGCGTGATGAGGATGAGGAGCATGATAACAAGGTTGAGAGTGAGGGTGAAGCTGAAGGAATGGCCGATGCCAATGATGTGGAAGGAGATGGAATCTTATTGCCATTTTCAGAACGCTTTTTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTATGTTGCATGAGAAAGAAAGGGTTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACACTGTATGAGAGGATACAATCGGCAAAGTTGAATTCATCATCTGCAGATAGGAAGTGGAGGGCTTCAAATGATGTAAACTCTAATGATCAATATGGCAGATTCATGACTGCCCTTTACAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCGTATGTGTTATTTACATTAGACAAGTTGATATATAAGCTTGTTAAGCAGCTGCAAGCAGTTGCTACTGATGAGATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAATGCTCGAGTTCTTCTACATGATGAGATCATGTACCGTATTGAATGTTCATCCACACCAACACGATTGTCTATTCAATTGATGGACTATGGACATGATAAGCCTGAAGCAACTGCTGTGTCTATGGAACCTAACTTTTCAGCCTATTTGCACAATGACTTCCTTTCTGTTTTTCCCGAAAAAAAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAAGTATGCCTGTGGTGATGAACTTTCAAGCGAGGCCATGGAAGGATTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACAGAAGACTTTTTGTTTCGAATGAGAAGTGAAAGGAAAGCTTTGCATCAGAACAGATTATGTCATGAACAGACAAATTCTAAAAACGTTTGTACAAGGAGAGTGCAGAGGTTCCGGAGATTGTTTTCCATCACATGA 4422 0.4055 MRYHIKVVIFRSITVTVILNFLFAGFGSSKVICVKGWVRILASIPVSVCFLWLDLLFASSSCSNEQLWSRDDGYMSSQLKRPMVSSLGETSGHPQMMAGGAQKLTTNDALAYLKAVKEIFQDKREKYDEFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFDEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVALLFHDHPDLLDEFTHFLPDTSATASTHYAPSRNSMPRDRSSAVPRQMSVEKRGRTVDSHGDHDLSVGHSDPDQDRVMIKAEKDQRRRAEKEKDLREEKDRRDQERDDRIYGPDGSQDFTMPRFPLKQKSGRRTDEIGAETLHQGGDSDENLSMRPMSSTCDDKSIVKGMYSQEFAFCEKVKEKLRNPDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLVGVMNKKSFWNEGIAAKLAKVEDKDRDRARDHDRDDRAKERDRELQERDKSSAFISKDVSGPKMYPYSSKDKYYGKPINELDLSNCEQCTPSYRLLPKNFTQYPIPMASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNVIKAESPIRIEDHLTALNRRCIERLYGDHALDVMEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPSLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDKEDVIKAKHNSVKVGTTSFGGSDGSPGVVANVTNSRQLNTSGNGDESIPLEQSNSRNEALDYNKHHEGTLMNPSMPDEVLVASKQGHSNERLVNANALMASGMEQINGRTNIDNASGLTATPSRPGNVAAEGGNFPSPEVCDSTRPATPINGAIIEGNKVHRYQEEPTGHFKSEREEGELSPNGDFEDNFAVYGDTSLTAVVHKGKNGGVSMQYQNRNEEEGCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVSGSESADGEECYQEERDEDEEHDNKVESEGEAEGMADANDVEGDGILLPFSERFLLSVKPLAKHVPPMLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHDEIMYRIECSSTPTRLSIQLMDYGHDKPEATAVSMEPNFSAYLHNDFLSVFPEKKKSGIFLKRNKRKYACGDELSSEAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRSERKALHQNRLCHEQTNSKNVCTRRVQRFRRLFSIT 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0905 1473 PANTHER SIN3B-RELATED 102 1332 IPR039774 GO:0003714
Lele53g0905 1473 MobiDBLite consensus disorder prediction 1117 1135 - -
Lele53g0905 1473 Coils Coil 641 661 - -
Lele53g0905 1473 ProSiteProfiles PAH domain profile. 404 473 IPR003822 GO:0006355
Lele53g0905 1473 ProSiteProfiles PAH domain profile. 188 258 IPR003822 GO:0006355
Lele53g0905 1473 SMART hdac_interact2seq4b 565 668 IPR013194 -
Lele53g0905 1473 SUPERFAMILY PAH2 domain 102 171 IPR036600 GO:0006355
Lele53g0905 1473 FunFam Paired amphipathic helix protein Sin3 108 170 - -
Lele53g0905 1473 Coils Coil 316 345 - -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 262 361 - -
Lele53g0905 1473 Gene3D Paired amphipathic helix 402 475 IPR036600 GO:0006355
Lele53g0905 1473 FunFam Paired amphipathic helix protein SIN3 402 475 - -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 501 532 - -
Lele53g0905 1473 SUPERFAMILY PAH2 domain 408 473 IPR036600 GO:0006355
Lele53g0905 1473 MobiDBLite consensus disorder prediction 1070 1148 - -
Lele53g0905 1473 Gene3D Paired amphipathic helix 186 259 IPR036600 GO:0006355
Lele53g0905 1473 MobiDBLite consensus disorder prediction 288 350 - -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 262 279 - -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 1096 1111 - -
Lele53g0905 1473 Pfam Sin3 family co-repressor 567 661 IPR013194 -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 1020 1039 - -
Lele53g0905 1473 MobiDBLite consensus disorder prediction 1020 1034 - -
Lele53g0905 1473 Pfam C-terminal domain of Sin3a protein 1188 1433 IPR031693 -
Lele53g0905 1473 ProSiteProfiles PAH domain profile. 102 172 IPR003822 GO:0006355
Lele53g0905 1473 FunFam Paired amphipathic helix SIN3-like protein 187 258 - -
Lele53g0905 1473 SUPERFAMILY PAH2 domain 186 257 IPR036600 GO:0006355
Lele53g0905 1473 Pfam Paired amphipathic helix repeat 426 470 IPR003822 GO:0006355
Lele53g0905 1473 Pfam Paired amphipathic helix repeat 211 255 IPR003822 GO:0006355
Lele53g0905 1473 Pfam Paired amphipathic helix repeat 125 169 IPR003822 GO:0006355
Lele53g0905 1473 Gene3D Paired amphipathic helix 108 170 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0905 Lele-ChrLele53 18711309 18723602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0905 94 185 WRKY Transcription Factor Family AT4G12020 59.574 1.98e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele53g0905 Sin3a_C 2.4e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0905 53 18711309 18723602 Lele55g0571 55 3712720 3719840 hybridization
Lele53g0905 53 18711309 18723602 Lele56g0549 56 4038049 4047004 hybridization