Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0900 ATGAACTCCTCCATAGCACTCATTCACAACATACACGTGAGCCCCATTTCCTTCATCATGAACTTCATCTTTCTTACTGCTTCAATCTTTCTCCTTTATTCATCATCGCTCTGTGTTTCCATCGAGGACGACGTGGTTTGTCTTGAAGGTGTAAAGAACTCATTTTCCGACCCAAATGGAAAACTCAGCTCCTGGAGCTTCAGCAACACTTCTGCGTCCTCAATCTGCCAGCTCGTCGGAGTTTCTTGCTGGAACGAGAAGGAGACCCGCATCATCAGCCTCCAGCTCCGTGACATGCAGCTCGCCGGAAAACTTCCTGAGTCGCTCAAGTATTGCCGGAGCCTCCAGACCCTCGTACTCTCCGGTAACGCTCTCTCCGGTTCTATCCCTCCTTATATCTGTAGCTGGTTGCCTTACTTGGTGACTCTAGATCTCTCTGGAAACCAAATCTCGGGTTCAATCCCACCCGAGATTGTGAATTGCAAGTTCCTGAATACCCTTATTCTGAACGATAACCAATTATCGGGTTCAATCCCTTACGAACTGGGTCGGCTTGACCGATTGAAGAGGCTCTCTGTTGTCAACAACGATCTTTCTGGTTCTATTCCACCGGATTTGTCCAAATTTGACGCAGCTGATTTCGATGGGAACGGTGGATTATGCGGGAAGCCTATTGGATCAAAGTGTGGTGGATTGAGTCGTAAAAGTCTCGGGATTATTATTGCTGCTGGTGCGATTGGTGCCTTGGGATCTTTAGTTGTGGGTTTCGCTCTCTGGTGGTGGTTCTTCCTGAGAATCAGTGAGCAAAAGAAAGAGTATAATAGTTATGGTGGTGGAAAGCAAGTGGGCGATTGGATTGATTTGTTAAAATCACACAAGCTTGTTCAAGTTTCTTTGTTCCAGAAACCCATCGTTAAAGTCAGATTAGCTGATTTGCTAATCGCTACTAATAGCTTTCATCCAGAAAACATCGTGATTTCTAGTAGAACAGGAGTCTCTTATAAGGCAGTTCTGCGTGATGGATCAGCTCTTGCCGTGAAGAGGCTTAATTCTTGTAAACTTGGGGAGAAGCGATTTAGATCAGAGATGAACAGATTGGGGCAACTCAGACATCCCAATTTGGTACCTCTATTGGGTTTCTGTATGGTGGAAGAAGAGAAACTTTTGGTGTACAAGCACATGTTCAATGGGACTTTGTATTCTCAGTTGCATAAAAATGGGCAAGCTAATAATATTCAATATAGTTTTCTGGATTGGCCAACCAGGTTGAGAATTGGGATAGGTGCTGCCAGAGGACTTGCTTGGCTTCACCATGCTTGTCAACCTCCCTATATTCACCAGAACATTAGCTCGAATATAGTCCTCCTTGACTATGATTTCGAAGCTCGAATAACAGATTTCGGATTGGCGAGGCTTGTGGTTACTCGTGATCCCAATGATAGCTCCTTTGTGAACGGTGATCTGGGTGAATTTGGTTATGTTGCTCCTGAGTACTCGAGCACCATGGTCGCTTCCGTGAAAGGCGATGTTTATGGTTTTGGAGTTGTTCTCTTGGAATTGGTCACTGGGATGAAGCCAGTGGAAGTGAACACTGGAGGAGGGGAAGGATTCAAAGGGAATTTAGTGGATTGGATCAATTGGTTAACAGTGACAGGGAGAACTAAAGAAGCCATAGATAAAGCTCTTTTAAATGAAAATCCTGAACATGGTGATGAATTTATGCAGTTCATGAAGGTTGCAATATCTTGTGTTGTTTCTCGACCTAAAGATAGACCTTCCATGTACCAAGTTTTCTCCTCACTGAAGAGCATGGCTGAGAAACACGGTTTTGCAGATCAGTATGATGAATTCCCAGTTGTCTCTGGCAAAGAAGACTCTGACCACAATAAGAGTTAG 1896 0.4446 MNSSIALIHNIHVSPISFIMNFIFLTASIFLLYSSSLCVSIEDDVVCLEGVKNSFSDPNGKLSSWSFSNTSASSICQLVGVSCWNEKETRIISLQLRDMQLAGKLPESLKYCRSLQTLVLSGNALSGSIPPYICSWLPYLVTLDLSGNQISGSIPPEIVNCKFLNTLILNDNQLSGSIPYELGRLDRLKRLSVVNNDLSGSIPPDLSKFDAADFDGNGGLCGKPIGSKCGGLSRKSLGIIIAAGAIGALGSLVVGFALWWWFFLRISEQKKEYNSYGGGKQVGDWIDLLKSHKLVQVSLFQKPIVKVRLADLLIATNSFHPENIVISSRTGVSYKAVLRDGSALAVKRLNSCKLGEKRFRSEMNRLGQLRHPNLVPLLGFCMVEEEKLLVYKHMFNGTLYSQLHKNGQANNIQYSFLDWPTRLRIGIGAARGLAWLHHACQPPYIHQNISSNIVLLDYDFEARITDFGLARLVVTRDPNDSSFVNGDLGEFGYVAPEYSSTMVASVKGDVYGFGVVLLELVTGMKPVEVNTGGGEGFKGNLVDWINWLTVTGRTKEAIDKALLNENPEHGDEFMQFMKVAISCVVSRPKDRPSMYQVFSSLKSMAEKHGFADQYDEFPVVSGKEDSDHNKS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0900 631 Pfam Leucine rich repeat N-terminal domain 42 84 IPR013210 -
Lele53g0900 631 Gene3D Ribonuclease Inhibitor 42 231 IPR032675 -
Lele53g0900 631 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 394 623 - -
Lele53g0900 631 CDD STKc_IRAK 327 604 - -
Lele53g0900 631 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 85 603 - -
Lele53g0900 631 SUPERFAMILY L domain-like 38 217 - -
Lele53g0900 631 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 41 230 - -
Lele53g0900 631 Pfam Protein tyrosine and serine/threonine kinase 342 600 IPR001245 GO:0004672|GO:0006468
Lele53g0900 631 Gene3D Phosphorylase Kinase; domain 1 280 393 - -
Lele53g0900 631 SUPERFAMILY Protein kinase-like (PK-like) 295 601 IPR011009 -
Lele53g0900 631 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 280 393 - -
Lele53g0900 631 Gene3D Transferase(Phosphotransferase) domain 1 394 623 - -
Lele53g0900 631 ProSiteProfiles Protein kinase domain profile. 319 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0900 Lele-ChrLele53 18675066 18676961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0900 22 626 Receptor kinase-like Gene Family AT1G27190 65.950 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Lele53g0900 PK_Tyr_Ser-Thr 3.2e-30 CL0016