Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0893 ATGGATCCGGCGGCTATCAATATGATGAACGACGATTCGTCTGCTAATGGGAACGCCAATACGTCGTCGTATAACATGGCGGAGATCTGGCAGTTCCCGATGAACGGTGGTGCGGGTCTCGGGGATTCTGGAGGCGGGTTGGGCTTGAGAAGGCCGCAGTTTGGGCAAAATTTGGGGCAGTTTGGCGATTTTACGTCAGGTCCGAACCCGAATGGCCGGGGTAATGATCCGAACTGTTCCGAACAACAGGGAGTGAACGGGGTCAATAGGAAGAAGCGCGATTCCGAGGATGAATTGGCGAAAGGCCTCTCCACCACCACCATCAACACCAACAACGGTGGCATTGGCAATAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAAGTATCAGGGAATAGGAATGAGAGTCTTGAAACTACAGCTGAAACAGAAACCAGTTCAGAAATGCCAGCTTCAGAGCCTCCTAAGCCAGCTTACATCCATGTACGAGCGCGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCGGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGCTGGTTCCTGGTTGTAACAAGAACACTTTCTCGATTCAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCACTACAGCACCAAGTTGAGTTCTTGTCGATGAAGCTTGAAGCTGTAAATTCAAGAGCCAACTCTGGCACTGGAATTTTTCCTCCTAAAGATTTTGGTCAACAGACATTTGACATGGCAATTGGTTCTCAAGCTCCACTGGATCAGTTCAGCCGCGGTTCATCGCCGGAGTGGCTGCACAAGCTGGTAGGAGGTGGACTTGAAAGAACAACATGA 888 0.4876 MDPAAINMMNDDSSANGNANTSSYNMAEIWQFPMNGGAGLGDSGGGLGLRRPQFGQNLGQFGDFTSGPNPNGRGNDPNCSEQQGVNGVNRKKRDSEDELAKGLSTTTINTNNGGIGNSNGVNDGDGKRLKVSGNRNESLETTAETETSSEMPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKNTFSIQVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANSGTGIFPPKDFGQQTFDMAIGSQAPLDQFSRGSSPEWLHKLVGGGLERTT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0893 295 FunFam Basic helix-loop-helix transcription factor 167 245 - -
Lele53g0893 295 Coils Coil 223 243 - -
Lele53g0893 295 SMART finulus 176 232 IPR011598 GO:0046983
Lele53g0893 295 MobiDBLite consensus disorder prediction 37 157 - -
Lele53g0893 295 MobiDBLite consensus disorder prediction 1 20 - -
Lele53g0893 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 243 IPR036638 GO:0046983
Lele53g0893 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 226 IPR011598 GO:0046983
Lele53g0893 295 MobiDBLite consensus disorder prediction 135 152 - -
Lele53g0893 295 Pfam Helix-loop-helix DNA-binding domain 174 227 IPR011598 GO:0046983
Lele53g0893 295 MobiDBLite consensus disorder prediction 58 86 - -
Lele53g0893 295 MobiDBLite consensus disorder prediction 101 119 - -
Lele53g0893 295 CDD bHLH_AtBPE_like 161 245 - -
Lele53g0893 295 Gene3D - 167 247 IPR036638 GO:0046983
Lele53g0893 295 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 264 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0893 Lele-ChrLele53 18621486 18623461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0893 24 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 49.817 7.70e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0893 HLH 1.5e-07 No_clan