Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0870 ATGAGACGCAACCGAGAGAAACCCTCCTTTTCCCGCCACGCTCCGTACTCCCAGTCTATGCCCAAGAGGCGTCGACCTCTTCCCGATCCTGCTCAGGAAGCCACCGCCGACGATGGCGCCGACAAGCACACAACAAGGCCGCCGCCGCCTTGCGCGGTGGTGGTTATGGGCCTCCCTTTAGACTGCTCTGTTCTCGATCTCAAATCTCGATTCGAGATCTACGGTACCATCTCCCGCATCCGCATCGATCGTGACGGGGTTGGCTACATTACCTATCGGAGCAAGGAATCTGCCGACGCCGCTATAGCTGCTGCACTTGACCCATCTTTCGGCATCACAGTCAGTTTGAAAAGGGTTCAGGTATTGTGGGCGACTGATCCTCTGGCCATGTGGAGGGAAGGAGTGGGCAATAGTAACAAGGAGAAGGGGTCGAGATCGAAACTTGTGCGGGCTGAGATACCTTTAAGCAGACATGGAAGAGGTAATAAACTAGCCTCAGCTATAGTGAATCCCAAGAATAGTGAGCCTAGCTCAAGTCGAGATGTGCCTTTCCGGGCCAGAGAAATCGTGGCTTATGATGACATTCTTTTTGGTAAGCTTAATTTTGAAAATTTGAAGTTGAAACTGGGAACACTATTTATAGCTGCATACAGTTACATGCAATTACAGGAATACATTGTGGTTCTGTTGGAGGGTGAAGATCATTACAGGGATTGTGTTGTTGCAGCAATATTGTTTGAGCAGTTGCTGTCCTGGAAGTCAAAGTATAGAGATATTCGGAAGCAGGGTGGTCCGGTGAAAGGAGGGAAGGTGCTGACATGGGGTAGGGGAAGTTCTGGGCAACTAGACCAAGGAGAGGTTGTTAGTTATGCTTTGAATCCGGAGCCTGTGACATCCTTGGACGACTACTTCATAACCCATGTCTCCGCTGGTTGGAGCCACTCTGCTTTTGTTTCTGATAGTGGGTGTGTATACACTTGTGGGGACGGCTCATTTGGTCAGCTTGGGCTTGGTGATCACAACCTGGCAGAGTTTCTTGCTTTGTTGATCACTTTATATGAAATTTCTGCAAATGGAGATCATAGTGCTGCGATATCTGTTGATGGACATCTTTACACTTGGGGAAGAGGATTTAAAGGCATTGTAGATGTTCACTCTCCTCAACGACTAAGTTCTTCTTTGAGGTTTGCCAAAGCTACTCTTGGATGGAACCATGCTTTAGCCTTAACTGGTGAAGAGGAAGGTTTTATGCTCGGTGGTAACCACCTTGAAGTGCTTACAAATCCTCCGAGTTTGAACTCACCTGGTAGTTATCGTGATTCATTGAATATAAAAGAAGCCAATCTGGAAAAAATCCCCGGTCTTGATGGAGTAAAGATTGTTGATATAGCTGCTGGAGCTGAACACTCTGCCCTAGTCACTGGCAAGACCTATACTCTCTACTTCTTCTAA 1452 0.4773 MRRNREKPSFSRHAPYSQSMPKRRRPLPDPAQEATADDGADKHTTRPPPPCAVVVMGLPLDCSVLDLKSRFEIYGTISRIRIDRDGVGYITYRSKESADAAIAAALDPSFGITVSLKRVQVLWATDPLAMWREGVGNSNKEKGSRSKLVRAEIPLSRHGRGNKLASAIVNPKNSEPSSSRDVPFRAREIVAYDDILFGKLNFENLKLKLGTLFIAAYSYMQLQEYIVVLLEGEDHYRDCVVAAILFEQLLSWKSKYRDIRKQGGPVKGGKVLTWGRGSSGQLDQGEVVSYALNPEPVTSLDDYFITHVSAGWSHSAFVSDSGCVYTCGDGSFGQLGLGDHNLAEFLALLITLYEISANGDHSAAISVDGHLYTWGRGFKGIVDVHSPQRLSSSLRFAKATLGWNHALALTGEEEGFMLGGNHLEVLTNPPSLNSPGSYRDSLNIKEANLEKIPGLDGVKIVDIAAGAEHSALVTGKTYTLYFF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0870 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 412 IPR000408 -
Lele53g0870 483 SUPERFAMILY RNA-binding domain, RBD 14 104 IPR035979 GO:0003676
Lele53g0870 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 321 IPR000408 -
Lele53g0870 483 Pfam Regulator of chromosome condensation (RCC1) repeat 269 318 IPR000408 -
Lele53g0870 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 308 318 IPR000408 -
Lele53g0870 483 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 268 480 - -
Lele53g0870 483 SUPERFAMILY RCC1/BLIP-II 267 475 IPR009091 -
Lele53g0870 483 Gene3D - 265 483 IPR009091 -
Lele53g0870 483 SMART rrm1_1 52 122 IPR000504 GO:0003723
Lele53g0870 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 104 IPR000504 GO:0003723
Lele53g0870 483 Gene3D - 2 127 IPR012677 -
Lele53g0870 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 368 IPR000408 -
Lele53g0870 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 126 IPR000504 GO:0003723
Lele53g0870 483 MobiDBLite consensus disorder prediction 1 48 - -
Lele53g0870 483 CDD RRM_SF 53 97 - -
Lele53g0870 483 MobiDBLite consensus disorder prediction 26 44 - -
Lele53g0870 483 PRINTS Chromosome condensation regulator RCC1 signature 270 286 IPR000408 -
Lele53g0870 483 PRINTS Chromosome condensation regulator RCC1 signature 305 318 IPR000408 -
Lele53g0870 483 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Lele53g0870 483 PRINTS Chromosome condensation regulator RCC1 signature 324 340 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0870 Lele-ChrLele53 18449171 18453384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0870 1 196 Homeobox Transcription Factor Family AT1G27050 51.185 4.37e-56 184