Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0869 ATGGCTGCTCCTAATAAGCTTTTTTCTTCTTCCTCAAATCTCACTGCTTTTCTTCAACACGAAAGCCTTCCTTCTCCTTCTTCTTCTCATGTTCTCGGCTCTTTCTTGCTTCACCACTCTGACCCCTCCTTCCAAGGTTCAAAACCTCTGGTTGATTTCGAGAATGTTAGAGGAAGCAGAGTCACAGAATTGCCATTCTTCCAACAAGCTCTGGAGGACAAAGAAGACAACTACACAGAAGAGGAATACGATGCGGCCTTTCATCATCAACCAGCTGGGAAGAAGAGGAGGCTCACAGGCCAACAAGTTCAATTCCTTGAGAAGAACTTCGAGGCAGAAAACAGGCTCGAACCAGAAAGAAAAGTTCAACTGGCTAAAGAACTCGGATTACAGCCAAGACAAGTCGCAATTTGGTTCCAGAACCGAAGAGCTCGGTTCAAAACCAAACAGCTCGAAAAAGACTACACCACCTTAAAATCTAGCTATGAAAAACTCAAAGCTGAATATGACACTCTTCTTCACCAGAATGACAAGTTGAAAGAAGAGGTGAATTCTCTGAAGAACAAGTTGATGGGAAGAGATCATCATAAAGAGAAAGAAGAGAATTATGACAAGTGTTTTGATGTTTTGATCTCGGACAATAATAATGGGGTTTCTGAAAACGGGTCAAAAGTTGAAAAGGTTCCTACAGTAATATGCAAACAAGAAGATGCCAATTCTGCTAAAAGTGATGTGTTTGATTCAGATAGCCCACACCACACTGCAGATTCGTCCCATGCCGAATTCGAAACAGAGCACTCGGATTTCTCACAGGACGAAGATCACAATCTCTTGAGTGATCTCCCATGTTTACCAAAGGTTGAAGGAGGGCCCTGTAACTTTGGATTGTTCCCATTTGATCAAGATCAACCCTTCTGTTTTTGGTCTTATTAA 933 0.4212 MAAPNKLFSSSSNLTAFLQHESLPSPSSSHVLGSFLLHHSDPSFQGSKPLVDFENVRGSRVTELPFFQQALEDKEDNYTEEEYDAAFHHQPAGKKRRLTGQQVQFLEKNFEAENRLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYTTLKSSYEKLKAEYDTLLHQNDKLKEEVNSLKNKLMGRDHHKEKEENYDKCFDVLISDNNNGVSENGSKVEKVPTVICKQEDANSAKSDVFDSDSPHHTADSSHAEFETEHSDFSQDEDHNLLSDLPCLPKVEGGPCNFGLFPFDQDQPFCFWSY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0869 310 SMART HOX_1 92 153 IPR001356 GO:0003677
Lele53g0869 310 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Lele53g0869 310 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Lele53g0869 310 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
Lele53g0869 310 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Lele53g0869 310 Coils Coil 148 189 - -
Lele53g0869 310 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Lele53g0869 310 FunFam homeobox-leucine zipper protein ATHB-6-like 97 143 - -
Lele53g0869 310 Pfam Homeodomain 94 147 IPR001356 GO:0003677
Lele53g0869 310 Pfam Homeobox associated leucine zipper 149 190 IPR003106 GO:0006355|GO:0043565
Lele53g0869 310 Gene3D - 87 156 - -
Lele53g0869 310 CDD homeodomain 94 150 IPR001356 GO:0003677
Lele53g0869 310 MobiDBLite consensus disorder prediction 242 273 - -
Lele53g0869 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 250 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0869 Lele-ChrLele53 18433588 18434818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0869 26 193 Homeobox Transcription Factor Family AT3G01470 49.412 1.69e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele53g0869 Homeodomain 7.1e-16 CL0123