Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0866 ATGGAATCACAGTGGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGTGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCTGTGGCCACCCGATTGTTTTTGTCAGCCCTGGGTTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTGATTGGTAAGAATGGTAGGATTTTTCAAGGACCAGGAACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGCGAACCTTTTTGGATTTTGTTTCACATGAGCCCTGTATTTAACAAGTATGATGGTAGTGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCTGCGTTAGGATAACTGACGTTAATTTGAGTGATGATGGGTCTATGGCGCAGGATTTTGTATATGGATCATGTCGGAAGGAATTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTTTGTCCCTTCATCAAGTGTCAGAAGTAGAACACGACGGTAGAGAACCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGTTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTACAAAAAAGATGAAGTGCTGGGTCGCAACTGTAGATTTCTAAGTGGACTGAATACAGATACCTCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAACACCAATTTTGGAATTTTCTACACATTTCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGTGTTCAAATAGAAGAAGGCTGTAAGAACGAGCAAGGTAGGCAGGGTCGACTGAGCCCTGAGAAGATTCAGCTCAGCGTGGTAGGAGCAGTGAGGGTTGCTGTGAGGAGTTCATCATTGACTGCTGGATCTTCCAAGTCATCATGTACAGTATAA 1230 0.4301 MESQWGLIDQSFDSRYSCHVREVLDELPDNFIITDPSICGHPIVFVSPGFLKMSGYSKEEVIGKNGRIFQGPGTCRRSVIEIREAIREERPIQINLLNYRKDGEPFWILFHMSPVFNKYDGSVSHFVAVQVPLSRKRRRSGCCVRITDVNLSDDGSMAQDFVYGSCRKELCSDSLLELGRVLSLHQVSEVEHDGREPNGEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRCSISDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYKKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDEHQFWNFLHISPIRDASGKIAYFVGVQIEEGCKNEQGRQGRLSPEKIQLSVVGAVRVAVRSSSLTAGSSKSSCTV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0866 409 CDD PAS 271 360 IPR000014 -
Lele53g0866 409 SMART pas_2 250 323 IPR000014 -
Lele53g0866 409 SMART pas_2 18 87 IPR000014 -
Lele53g0866 409 CDD PAS 27 129 IPR000014 -
Lele53g0866 409 FunFam protein TWIN LOV 1 262 400 - -
Lele53g0866 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 361 IPR035965 -
Lele53g0866 409 TIGRFAM sensory_box: PAS domain S-box protein 21 128 IPR000014 -
Lele53g0866 409 TIGRFAM sensory_box: PAS domain S-box protein 275 360 IPR000014 -
Lele53g0866 409 Pfam PAS domain 262 361 IPR000014 -
Lele53g0866 409 Pfam PAS domain 32 131 IPR000014 -
Lele53g0866 409 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Lele53g0866 409 SMART pac_2 93 136 IPR001610 -
Lele53g0866 409 SMART pac_2 325 364 IPR001610 -
Lele53g0866 409 Gene3D PAS domain 17 141 - -
Lele53g0866 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Lele53g0866 409 Gene3D PAS domain 262 406 - -
Lele53g0866 409 PANTHER PROTEIN TWIN LOV 1 4 396 - -
Lele53g0866 409 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Lele53g0866 409 ProSiteProfiles PAS repeat profile. 275 297 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0866 Lele-ChrLele53 18390942 18393977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0866 248 386 AGC Kinase Gene Family AT5G58140 38.129 6.08e-27 111