Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0860 ATGACTACGATTCAGGCAGATAATCGTGGAGAGCCTCAAAGAACTGATCTGAATTGCAAAGAAACTGCTAAGGCTCAGAATTCAGCATCTTCATTTAAAAGATGGGGTAGAAAATATCCATTTGTCAGATATGGGCTTCCAATGATATCTCTTACTGTTCTTGGGGCTATTGGACTCGGTCATCTCTTGCAAGGCAGCAAGGACATTGCAAAGGTGAAAGATGATCAAGAATGGGAAATAATTGAAACAAGGAAAGCATTGTCTAGAACTGGGCCAGTAGATGCGTATAACCCAAAAAAGATTTCATTGGAGGAGGAGTTACAGGCCTTACAAAAGAAGGTGGACATCAATAAGTACGAGTACAAGAAAATTCCCAAACCAAATGAAGGCAATCTAAAGTCAAAAGGCAACCTCACCGCTAGTGTTGATAGAGTTCTGCTTGGCACAGAGCATGAAGGAAGATGCGATCCCAACTGGGAGAAAAACCGCCAGAAGTTGGCTGATTGTGCACTAGGATTTGGGAAAGGCACAACTGGTGGAAAGGGTGGTCCATACTATGTGGTGACAGGTCCCTCAAATGATGACATGGTTAACCTCAAAGGTACCCTTAGGCATGCAGTTACAAGGATAGGTCCCTTGTGGATTTTCTTTAAACACAGCATGGTGATTAAGCTGCAACAGGAGCTAATTATGGCTGGGGATATGACCATTGATGGCAGAGGAGCTTATGTTGTAATCACAGGAGGGGCCTGCATTACCATCCAGTATATCAAGAATGTGATCATTCATAACATTAAGATCTTCAACATAGGGTCTACCAGTGGGGGAATGATTAGAAATAGTGAAGACCATTATGGTTTGAGGACAGTAAGCGATAGTGATGGGATTTCAATCTTTGGCTCCAGCAAAGTCTGGATTGATCATGTCTCCATGAGCTATTGCGCAGATGGACTCATAGATGCCATCATGGCATCCACTGCCATCACCATCTCCATCTCCAACTGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGCGCCACAGACAGCTATGAAGGACACGTCAATATGCAAATCACAGTGGCATTCAATCACTTTGGACGGGGATTAATCCAAAGGATGCCAAGCAAGCATCCTACCATCATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACATATTTGCCAAAGAGGTGTGTAAGAGAGAGTACTCACCAGAGAGCTAG 1230 0.4366 MTTIQADNRGEPQRTDLNCKETAKAQNSASSFKRWGRKYPFVRYGLPMISLTVLGAIGLGHLLQGSKDIAKVKDDQEWEIIETRKALSRTGPVDAYNPKKISLEEELQALQKKVDINKYEYKKIPKPNEGNLKSKGNLTASVDRVLLGTEHEGRCDPNWEKNRQKLADCALGFGKGTTGGKGGPYYVVTGPSNDDMVNLKGTLRHAVTRIGPLWIFFKHSMVIKLQQELIMAGDMTIDGRGAYVVITGGACITIQYIKNVIIHNIKIFNIGSTSGGMIRNSEDHYGLRTVSDSDGISIFGSSKVWIDHVSMSYCADGLIDAIMASTAITISISNCHFTKHNEVMLFGATDSYEGHVNMQITVAFNHFGRGLIQRMPSKHPTIISEGNRFIAPNNIFAKEVCKREYSPES 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0860 409 PANTHER PECTATE LYASE 18-RELATED 154 376 IPR045032 GO:0030570
Lele53g0860 409 SMART amb_all 220 395 IPR002022 -
Lele53g0860 409 Gene3D - 150 409 IPR012334 -
Lele53g0860 409 Coils Coil 100 120 - -
Lele53g0860 409 Pfam Pectate lyase 239 376 IPR002022 -
Lele53g0860 409 Pfam Cytochrome c oxidase assembly protein COX16 42 129 IPR020164 GO:0031966
Lele53g0860 409 PRINTS Pollen allergen Amb family signature 228 244 IPR018082 -
Lele53g0860 409 PRINTS Pollen allergen Amb family signature 169 186 IPR018082 -
Lele53g0860 409 PRINTS Pollen allergen Amb family signature 292 313 IPR018082 -
Lele53g0860 409 PRINTS Pollen allergen Amb family signature 192 217 IPR018082 -
Lele53g0860 409 SUPERFAMILY Pectin lyase-like 154 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0860 Lele-ChrLele53 18321757 18327751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0860 154 407 Polysaccharide Lyase AT2G02720 59.857 3.03e-108 324